Transcript Dmel\oc-RA

General Information
Symbol	Dmel\oc-RA	Species	D. melanogaster
Annotation Symbol	CG12154-RA	FlyBase ID	FBtr0089650
Feature type	mRNA	Associated gene	Dmel\oc
Created / Updated	2004-06-05/2004-06-05

Evidence Rank	Weakly Supported	Length (nt)	3755
Evidence Score	3

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 13 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EC054682 EK190660 EC054172 EP06406 EK068232 EC054681 EP21336
End(s) extend beyond the annotated transcript, internally consistent	EK211139 EK217541 EK154824 EK042809 RE67026 RE45526
Sequence
	GGGTTGTTTTTGTGCGTCGTCCGTCGCCCAGTTGCTCAGTTGCTCATTCG CCCCGTTCGCCGCTCGTTCGATCGCTCTCGCCACTCGCCGCGTTCGCCGA TAAGCAAGCAAGCACCAGCGCAAGCCAATAACAACAATCAATTCGCCGTC GCCAAACCGAATCAAATCAAATCGAAGCAAACTAAACCAATCAAACACAA ATAAACAAATATCAACACGAGAAGCTATAGCTAACACAGCTATAGAGAAA CAAAGAGCCCCAGAGGAGAATACTAAGTAATACAGAGAGATATATCCTTT TGGATATAACGCAGTGCCAAGTGACGAGAATCTGTTTTTTTACCGTGTTG CCAGTGCTAAACCATAAACATCGCCCAAAAAACATACATCTCTGGAATAC AATATTTATATATATATAAATATACATATATATCTTTATATATATGCATG TGTAAAATATACTCATGCCATAACCATATAGTAGTTGGATCCGAAAACAA GTCACCATTGGAATACAGCACCGTTTTGCTTCTAGTTTTGTTTGTGTTTT TTTTTCGATCCTACTGAAAGGACCTAGAGCGCACTAACCAGCGATTATCG CTCTACTTGACTATCGATCGGAATACGTGAGTGACCTGGTGGATAGATCC AGCCAGTTCCAGCTCCAGCTCCAGCTTCAGCTACAGATACAGATACGGAT ACGGATACGGATTATAGAAGCCTGAGGCCAGTGGAGACACACAGCTTCAA CGTGGCGCTGCACTCGACCGAGGCCTTAATGGCGGCGGGCTTCCTCAAAT CGGGCGATTTGGGCCCCCATCCGCACAGTTACGGGGGTCCGCATCCGCAT CATTCGGTGCCGCACGGACCCCTGCCGCCCGGCATGCCCATGCCATCGCT GGGGCCCTTCGGCCTCCCACACGGACTGGAGGCCGTCGGGTTCTCCCAAG GTATGTGGGGCGATCTATGCTATCCAGGCGTCAACACACGAAAACAGCGT CGCGAACGCACCACATTCACACGCGCCCAATTGGATGTTCTGGAAGCGCT ATTTGGCAAGACCCGTTATCCGGACATATTCATGCGCGAAGAAGTGGCGC TCAAGATCAATCTGCCCGAATCTAGAGTACAGGTGTGGTTCAAGAATCGC CGCGCCAAGTGCCGCCAACAGTTGCAGCAGCAGCAGCAGTCGAATAGCTT GAGCAGCTCGAAGAATGCCAGCGGTGGCGGCAGCGGCAACAGCTGCAGCA GCTCCTCGGCCAACAGTCGCAGCAATAGCAATAATAACGGCAGCAGCAGC AACAACAACACACAGAGCTCCGGCGGCAATAACAGCAACAAGTCGTCGCA AAAGCAGGGCAACTCACAGTCCAGCCAGCAGGGCGGTGGCTCCTCCGGTG GCAATAATAGCAACAACAATTCGGCAGCAGCGGCAGCCAGTGCAGCGGCA GCGGTGGCAGCGGCCCAATCGATTAAGACGCACCACAGTTCCTTTTTGAG CGCCGCAGCGGCGGCAGCATCGGGCGGTACAAATCAGTCGGCCAACAATA ATAGCAACAACAACAACCAAGGCAACTCAACGCCGAACAGCAGCAGCAGC GGCGGCGGCGGCGGTAGCCAAGCGGGCGGACACCTATCCGCGGCAGCAGC AGCGGCTGCCCTAAACGTGACCGCCGCCCATCAGAACTCCTCGCCACTGC TGCCCACGCCGGCCACGTCCGTCAGTCCGGTGAGCATCGTTTGCAAAAAG GAGCACTTGTCCGGCGGCTATGGATCCAGTGTGGGTGGCGGCGGCGGCGG CGGTGGCGCCTCATCCGGCGGCCTCAATTTGGGCGTCGGCGTCGGCGTTG GCGTTGGCGTCGGTGTGGGCGTATCGCAGGATCTGCTTCGCTCGCCCTAT GATCAGCTAAAGGATGCCGGTGGTGATATTGGTGCCGGAGTGCATCATCA TCACAGCATCTATGGCTCGGCCGCCGGCAGCAATCCGCGCCTGCTGCAGC CGGGTGGCAATATCACACCGATGGACAGCAGCAGCAGCATCACCACACCA TCGCCGCCCATTACACCCATGTCGCCGCAATCGGCGGCCGCAGCGGCCCA TGCCGCCCAATCGGCCCAGTCCGCCCACCATTCTGCCGCCCATTCGGCCG CCTATATGTCCAATCATGATTCGTATAACTTCTGGCACAATCAGTACCAG CAATATCCGAATAACTATGCCCAGGCGCCCAGCTACTACTCACAGATGGA GTACTTTAGCAATCAGAATCAGGTCAACTACAACATGGGCCATTCGGGCT ACACGGCCTCCAATTTTGGTCTGTCGCCATCGCCATCCTTCACGGGCACC GTGTCCGCGCAGGCCTTCTCCCAGAACAGCCTGGATTACATGTCGCCGCA GGATAAGTACGCGAATATGGTGTAGAATCTACTCTTCCAATACTGCAGCG GTGGCAGCAACAACAACAGTTCAGCGGGGGCAAGTGGTTCGGGTTCGGGT TCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCTGGTTGTGGATCTGGTTC TGGTTCTGGTTCTGGTTCTGGATCGGGGAGCAATAGTTCTCCCCAGCTGG AGCAGCACCATCATCAGCAGCACCAGCACCAGCTACAGCAGCATCAGCAT CACCAGAATCATCACCAGAATCAACACCAGAATCACCACGGCCATCATCA TCATCAGCAGCAACACCATCATGATGATGAACAGCGACAGGATATAGGGC ATCAAGGAGATCAGCAGCAACTGGATCATACGTTCGGTTAAGATTGATAT AGCGAGTATAGAGCCACATGGATACATATCTACAGCCCACATAGATACAG CCCCCGACACTCCGCTGCATTCTCAGAACAAATTCGAAGACACACCGACC GTAGATACACTTCCTTTGCGATCGTATTTGTTGGAAATAGGAAATTCAAG TTCTCATTGATTTCGAAAGACTCTTCTTGACTCGTATAAATTCAGAGTGA TAGATATATAGATTTCTCACATTATTGATTGTTAGATTAATTATTAAATT TCATATTGAGGCATTTAGATTTCAATATCAATATCGTACATGGTTATTTA TAGATTCAAGAAAATTCTTTTAAGTCTCAAACTTTCGAACATCCAATTTA GCAATGCCAACTATGATCGCGAAATGGAATGCACCGCGTTGGAGGTCTAT TTCCATTCTTTTTTTTTTTTTTTTTGTGTAGTTAACAAGAATTTTTTTTT AAATATATATATATATATATGTATTAGAAGCGTGTGTAAAAAGCGGGGGG AGTTACAAGTTTATACAGCCCAAACATAAACGTAAATCTATAACTAAACA TAGGTATTATAGGCCTAGCTTAAGCCGCCAGGATCAACGAAGTAAATGAG TGATAAATCAAGGAAAAAAAACCGATGACAAACATTTGTTAAAATCCAGA GAGTAAATGCATGCGAGGATTGCGAAAAGTGGGGCGTTAATTGTAAGTTG GCAGGAGAGTTTTTAAATGCAATACGTAGACCATTACGTGGTACAGCCAG GGGGGCGTTGGGTGGCAATCAACCCAAAAAAAAAAACGTATGGGGACATT TGGGGATCGCCAGTAAGAGGAGAACAGAGCTGCACCACCAACACCACCAC CACCATAGAACTGGTGGTTTGGACCAGCTCAGCATATCATAAAGCTAAAA CTTAATTCCAATTTCAAGTTCTTTAAACCAAACTAAGACATAACATTATG AAAAC
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) oc-RB FBtr0100341 3737
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) oc-PA FBpp0088593 671
Derived from OTHER transcripts	Name FlyBase ID Length (aa) oc-PB FBpp0099746 665
Comments
	Unconventional splice site postulated
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_078536
Synonyms
	CG12154-RA oc-RA
References ( 3 )
FlyBase analysis	FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. [FBrf0182792] FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]