Transcript Dmel\pan-RC

General Information
Symbol	Dmel\pan-RC	Species	D. melanogaster
Annotation Symbol	CG34403-RC	FlyBase ID	FBtr0089160
Feature type	mRNA	Associated gene	Dmel\pan
Created / Updated	2004-06-05/2004-06-05

Evidence Rank	Strongly Supported	Length (nt)	3274
Evidence Score	15

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 17 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent	IP15537
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EK133323 EK189531 EP08334 EP06936 EK037714 EK063420 EK194835 EK050136 EK220654 EK196248
End(s) extend beyond the annotated transcript, internally consistent	EK021416 EK165711 EK117109 EK108433 EK062439 EK175947
Sequence
	CGCAGACGTGGTACGGCGTTTTAAATCTGATAACATTTTGAACCGGGAAT TATTTTAGAGTACCATTCTTTGTTTTGTGCCTGTTTCAGTATAAATTAAT TATGCGCCTGATTTAAAGTACAAAATGTGTAAATATATCACCTTACCGTC GCGGGTGCACCCAATTGTGCTTTGATGAATAAATATACATATATGCAACA TATATAACTTCCTGTGTTAGTATAAGTGTATGTCAGCCAAAAACAAATAT ATATATGAGTGTTTATCGGCATTCGTGTGCTGGCAGAGCAGCGATCAAAG CTGCGTTCGGTACTCGTTGACTGGCCCAAGAATGAATTCTCGTGCAAGTG TGTTGATAAAAAGTATACGTATGTATGTATGACATACAAAAATATTGTGT CTGATTAATTAATGCGTGTATGCCTTTAACTGTGAAACCTTTTTCAATTA GTATTTTTCTCACATGTAAGTGTGCTTAATAACAGAAAAGTTTGCTGCAA ATTTGTGGCTTTGTGGATAGCTTTTCAGTAAACTAACGTATAAAGGATTC AAATTTTACTGCTCTAATCTCTCGGATTGTTTAATCAAATCATCACTATA TGCCCTTATAGAGTATGGATTATTTAATTATTCTGCAGTGCAAAGAAGTT TTTCGAGTCTATGTAACTTTTGCAATTTAGGTAAATACGACCTAACCGTC AAAATCATGCCTCATACACACAGCAGGCATGGATCATCAGGAGATGATTT ATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGAGATCGCGAGG ATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAAGTCTAGCTTA ATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTTCAAGGCCGGA CCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCTAGCTTTAACA TGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTCTCCAAGTGGC TTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGTTTTTTTGTCA CAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGCGGAATTCCTC CATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGCGCTATACCCA TTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAGATATGTCTCA AGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCTAGTTTTAGAA CTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGCAAGTGATTTT CCATTCCGTTTTTCACCTAGCCTTTTACCTTCAGTACATGCCACATCGCA CCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGCTCTAAACAAG AATGCGGTGTTCAGGACCCAACAACGAATAATAGATATCCAAGGAACCTG GAAGCAAAGCACACATCAAATGCGCAATCAAATGAATCCAAGGAGACAAC AAATGATAAAAAAAAACCCCATATTAAGAAGCCACTAAATGCGTTCATGC TCTATATGAAGGAAATGCGTGCTAAGGTTGTTGCTGAATGCACTCTGAAG GAATCGGCTGCGATTAATCAGATTTTAGGAAGACGGTGGCACGAACTTTC CCGCGAAGAACAAAGCAAATATTACGAAAAAGCTCGACAAGAGCGCCAAT TGCATATGGAATTGTATCCGGGGTGGAGCGCACGAGATAACTATGGTTAC GTGTCAAAAAAGAAAAAGCGAAAAAAAGACAGATCGACAACGGATTCGGG AGGCAATAATATGAAAAAATGCCGCGCCCGTTTCGGACTAGATCAACAGA GTCAGTGGTGCAAACCGTGCAGGCGCAAAAAGAAATGTATTCGTTATATG GAAGCCCTGAACGGCAATGGGCCCGCCGAAGACGGCAGCTGTTTTGATGA GCACGGAAGTCAGCTAAGTGATGACGACGAAGATGACTACGATGATGATA AACTAGGCGGAAGTTGTGGAAGCGCCGACGAAACCAATAAAATAGAAGAT GAGGACTCGGAATCCCTTAATCAATCTATGCCAAGCCCAGGCTGTCTTAG TGGATTGTCCAGTTTACAGAGCCCATCGACAACAATGAGCTTGGCAAGCC CACTTAACATGAATGCCAATTCAGCAACCAATGTTATATTTCCTGCTTCT TCTAATGCACTTTTAATTGTCGGCGCAGACCAGCCGACAGCACAGCAACG ACCCACATTGGTGTCAACCTCGGGATCGAGCAGCGGTTCAACCAGTAGCA TAAGTACAACCCCAAATACGTCGAGTACAGTTTCGCCAGTTACATGTATG ACCGGTCCGTGTCTCGGTTCATCTCAGGAACGAGCCATGATGCTTGGAAA TCGGTTCAGTCACTTGGGAATGGGGCTAAGTCCACCAGTAGTTAGCACGA GCACCAGTAAATCTGAACCATTTTTTAAGCCTCATCCCACAGTTTGCAAT AATCCTATATTTGCATTGCCATCAATTGGTAATTGTAGTTTAAATATTTC TTCAATGCCAAACACATCCCGAAACCCTATTGGTGCTAACCCACGAGATA TTAATAATCCCCTTAGCATCAATCAGCTGACTAAAAGACGTGAATATAAA AATGTTGAGTTAATTGAAGCTAGTGAGTCAAAGACTATAGTTGCCCATGC CGCTACATCCATTATTCAACATGTAGCAGTGAACGGCTATCATGCTAATC ACTCGCTTTTAAATAGCAACTTGGGCCACCTTCATCACCAATTAAATAAT CGTACAGAAAACCCGAATAGAAGTGAGCAGACAATGCTGTCCGTAAGTAA TCATTCTGTAAATAGCAGTGAATGCCATAAAGAATCTGATTCGCAGGCTA TTGTATCTAGCAATCCTCCAAACGCTGGATCTTCCGATAACGGCGTTATT AGCGTTTCATAACTGATCGCCATGGATTTGTAGAATTGATTAATCAAATT TTAATGTTAATGTGTGAGAAAATAATTAAAATAAAAACATAAGTGCAATA ATTATTATTCTCGCCAGCCCAAAGCCATCTTATGAAACAAAAGGCCATCA AAACTAGTGCCACGACTCACATCGCAATATTTCGTTTAATAAAGAAAACA TAGAATTGGTGCACAAAAATCTTTTGAAACGACTCCGAGGCCAACCCGAA AGAATAAAGAAACATGAGTCAAATCTCAGGCTAGGCCGTGCCAAATAGAA TAAACAGACAATACACACTAAAAC
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) pan-RA FBtr0089161 2799 pan-RB FBtr0089159 2988 pan-RD FBtr0089162 2839 pan-RE FBtr0089156 2868 pan-RF FBtr0089158 2742 pan-RG FBtr0089157 2800 pan-RH FBtr0100245 2976 pan-RI FBtr0100246 3519 pan-RJ FBtr0112657 3891
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) pan-PC FBpp0088227 751
Derived from OTHER transcripts	Name FlyBase ID Length (aa) pan-PA FBpp0088228 751 pan-PB FBpp0088226 751 pan-PD FBpp0088229 751 pan-PE FBpp0088223 751 pan-PF FBpp0088225 751 pan-PG FBpp0088224 751 pan-PH FBpp0099631 747 pan-PI FBpp0099632 410 pan-PJ FBpp0111569 1192
Comments
	DGC clone GM04312 appears problematic: incomplete CDS
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_166719
Synonyms
	CG17964-RC pan-RC
References ( 3 )
FlyBase analysis	FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. [FBrf0182792] FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]