Transcript Dmel\pan-RF

General Information
Symbol	Dmel\pan-RF	Species	D. melanogaster
Annotation Symbol	CG34403-RF	FlyBase ID	FBtr0089158
Feature type	mRNA	Associated gene	Dmel\pan
Created / Updated	2004-06-05/2004-06-05

Evidence Rank	Strongly Supported	Length (nt)	2742
Evidence Score	15

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 18 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent	IP15537
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	RE55961 EK133323 EK189531 EP08334 EP06936 EK037714 EK063420 EK194835 EK050136 EK220654 EK196248
End(s) extend beyond the annotated transcript, internally consistent	EK021416 EK165711 EK117109 EK108433 EK062439 EK175947
Sequence
	ATCGACAGTTGCCATCGTCGTTATTCCAGCACTAATTTAAAAAAAATTCG ATCAACGCAGACGTGATATGCCCTTATAGAGTATGGATTATTTAATTATT CTGCAGTGCAAAGAAGTTTTTCGAGTCTATGTAACTTTTGCAATTTAGGT AAATACGACCTAACCGTCAAAATCATGCCTCATACACACAGCAGGCATGG ATCATCAGGAGATGATTTATGCAGTACTGATGAAGTGAAGATTTTTAAAG ACGAAGGAGATCGCGAGGATGAAAAAATATCATCTGAGAACTTATTAGTT GAAGAAAAGTCTAGCTTAATAGATTTAACTGAAAGTGAGGAAAAGGGTCA CAAAATTTCAAGGCCGGACCACAGCCCTGTTTTTAATAAGCTGGACACCC ACGCCCCTAGCTTTAACATGGGTTACTTAGTTTCTCCTTATTCGTATGCC AATGGTTCTCCAAGTGGCTTACCGGTAACTATGGCCAACAAAATTGGACT GCCTCCGTTTTTTTGTCACAATGCTGATCCGTTATCAACACCACCACCAG CGCATTGCGGAATTCCTCCATATCAACTGGATCCTAAGATGGGCTTAACT CGACCAGCGCTATACCCATTTGCGGGAGGTCAATATCCTTACCCAATGCT AAGTTCAGATATGTCTCAAGTGGCATCATGGCACACTCCTTCTGTTTATT CTGCATCTAGTTTTAGAACTCCTTATCCCTCCTCACTACCAATAAATACT ACACTTGCAAGTGATTTTCCATTCCGTTTTTCACCTAGCCTTTTACCTTC AGTACATGCCACATCGCACCACGTTATAAATGCTCATTCTGCTATTGTGG GGGTTAGCTCTAAACAAGAATGCGGTGTTCAGGACCCAACAACGAATAAT AGATATCCAAGGAACCTGGAAGCAAAGCACACATCAAATGCGCAATCAAA TGAATCCAAGGAGACAACAAATGATAAAAAAAAACCCCATATTAAGAAGC CACTAAATGCGTTCATGCTCTATATGAAGGAAATGCGTGCTAAGGTTGTT GCTGAATGCACTCTGAAGGAATCGGCTGCGATTAATCAGATTTTAGGAAG ACGGTGGCACGAACTTTCCCGCGAAGAACAAAGCAAATATTACGAAAAAG CTCGACAAGAGCGCCAATTGCATATGGAATTGTATCCGGGGTGGAGCGCA CGAGATAACTATGGTTACGTGTCAAAAAAGAAAAAGCGAAAAAAAGACAG ATCGACAACGGATTCGGGAGGCAATAATATGAAAAAATGCCGCGCCCGTT TCGGACTAGATCAACAGAGTCAGTGGTGCAAACCGTGCAGGCGCAAAAAG AAATGTATTCGTTATATGGAAGCCCTGAACGGCAATGGGCCCGCCGAAGA CGGCAGCTGTTTTGATGAGCACGGAAGTCAGCTAAGTGATGACGACGAAG ATGACTACGATGATGATAAACTAGGCGGAAGTTGTGGAAGCGCCGACGAA ACCAATAAAATAGAAGATGAGGACTCGGAATCCCTTAATCAATCTATGCC AAGCCCAGGCTGTCTTAGTGGATTGTCCAGTTTACAGAGCCCATCGACAA CAATGAGCTTGGCAAGCCCACTTAACATGAATGCCAATTCAGCAACCAAT GTTATATTTCCTGCTTCTTCTAATGCACTTTTAATTGTCGGCGCAGACCA GCCGACAGCACAGCAACGACCCACATTGGTGTCAACCTCGGGATCGAGCA GCGGTTCAACCAGTAGCATAAGTACAACCCCAAATACGTCGAGTACAGTT TCGCCAGTTACATGTATGACCGGTCCGTGTCTCGGTTCATCTCAGGAACG AGCCATGATGCTTGGAAATCGGTTCAGTCACTTGGGAATGGGGCTAAGTC CACCAGTAGTTAGCACGAGCACCAGTAAATCTGAACCATTTTTTAAGCCT CATCCCACAGTTTGCAATAATCCTATATTTGCATTGCCATCAATTGGTAA TTGTAGTTTAAATATTTCTTCAATGCCAAACACATCCCGAAACCCTATTG GTGCTAACCCACGAGATATTAATAATCCCCTTAGCATCAATCAGCTGACT AAAAGACGTGAATATAAAAATGTTGAGTTAATTGAAGCTAGTGAGTCAAA GACTATAGTTGCCCATGCCGCTACATCCATTATTCAACATGTAGCAGTGA ACGGCTATCATGCTAATCACTCGCTTTTAAATAGCAACTTGGGCCACCTT CATCACCAATTAAATAATCGTACAGAAAACCCGAATAGAAGTGAGCAGAC AATGCTGTCCGTAAGTAATCATTCTGTAAATAGCAGTGAATGCCATAAAG AATCTGATTCGCAGGCTATTGTATCTAGCAATCCTCCAAACGCTGGATCT TCCGATAACGGCGTTATTAGCGTTTCATAACTGATCGCCATGGATTTGTA GAATTGATTAATCAAATTTTAATGTTAATGTGTGAGAAAATAATTAAAAT AAAAACATAAGTGCAATAATTATTATTCTCGCCAGCCCAAAGCCATCTTA TGAAACAAAAGGCCATCAAAACTAGTGCCACGACTCACATCGCAATATTT CGTTTAATAAAGAAAACATAGAATTGGTGCACAAAAATCTTTTGAAACGA CTCCGAGGCCAACCCGAAAGAATAAAGAAACATGAGTCAAATCTCAGGCT AGGCCGTGCCAAATAGAATAAACAGACAATACACACTAAAAC
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) pan-RA FBtr0089161 2799 pan-RB FBtr0089159 2988 pan-RC FBtr0089160 3274 pan-RD FBtr0089162 2839 pan-RE FBtr0089156 2868 pan-RG FBtr0089157 2800 pan-RH FBtr0100245 2976 pan-RI FBtr0100246 3519 pan-RJ FBtr0112657 3891
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) pan-PF FBpp0088225 751
Derived from OTHER transcripts	Name FlyBase ID Length (aa) pan-PA FBpp0088228 751 pan-PB FBpp0088226 751 pan-PC FBpp0088227 751 pan-PD FBpp0088229 751 pan-PE FBpp0088223 751 pan-PG FBpp0088224 751 pan-PH FBpp0099631 747 pan-PI FBpp0099632 410 pan-PJ FBpp0111569 1192
Comments
	Only one EST supports this alternative transcript
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_166722
Synonyms
	CG17964-RF pan-RF
References ( 3 )
FlyBase analysis	FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. [FBrf0182792] FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]