Transcript Dmel\Ubx-RE

General Information
Symbol	Dmel\Ubx-RE	Species	D. melanogaster
Annotation Symbol	CG10388-RE	FlyBase ID	FBtr0083351
Feature type	mRNA	Associated gene	Dmel\Ubx
Created / Updated	2004-06-05/2004-06-05

Evidence Rank	Strongly Supported	Length (nt)	4702
Evidence Score	11

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 18 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent	RE43738
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EK170414 EK084347 EK157028 EK063846 EK189440 EP02129 EK155715 EK238919 EK049458 RE71819 EK108158 EK020219 LD09363 EP01057 EK117325 EK213843 RE46542
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	ATGAATGAACGAGAGGCGCCCACCCCGATAAACTTAAACTGAACGAACAC TCAAGAGAGAGCGCAAGAGCGCTCAAAAACAATCTGGTTTTGAGCGTTTC GCTGGCTCTCTGTTTCTGTTTTCCACTCGTTTTTAGGCCGAGTCGAGTGA GTTGAGTCGGCAGAGCAAAGTCAAAACACTGGCAACTGCGATTTGGTGCC ACATTCGTTCGATGGCAACGGATTGGATAACAGGCGCGCGCTTTGTTTTA TTATCCACATTATCAGCGGCATTATTGTTATTATTGGCCCTCAGCGCTTT ACCGCTCGCCCACGCGTCCGCCCGTGAATGCCGCGCGGAAAAGTCGCTTT CCACTAGATTGGCGTCCAGATTCGAGGAAATCCGTCAGCAGACGCATTCG CGCCCGTTCGGTCAGCACTATGGCTAATAATCGTTCAAATCGTTAAAACC ATAAAAATAATAATAATAATTGCAATAACAATAAACATAGTAATAATCGT AACGCTTACGAGCCTTTGATAGTGCCAAGGCAAGCGCAATCCAAGTATTC AAATTCGAATTCAATTAACAGCAAAGTGCAATTGGCTAAAAACCGAAACC AAAACGCAACAAAGTATACGAAACACTTGTGAAACCGTACAAACAATTGT GGAAAAAAATTTAAAGATTATTAAGATTGAAGTCTCAATAAACATTAGTG CTTAAATAAATTTAAAACGACCCGCGTGGAGAGTGCAATAAAAAGAATAA CTTTTGAAATAAATATTTACCAAACAGAAAAATATTTTATAAATATTTAA ATAAGTGAAAAACAAATTGGTTACTCTGAAACAAAGAAAATTCAAATTGG TGCTAAAACAAAGGAGAAAAAATTTCAAGAATATTTTACAAATAATAAGA CATATTTAACTATATAAAACCAAACTTAATCAACAAAGACTTGGAGTGAA AATATAAAATAAATTTTAAAAAGAGTTTAACAAAATTTGTTTAAATCCAA AGGAGGCAAAGGAACAGCACAGAAAGCGAGGAAACACTCAAATAAAATCC GCCAAAAATCGCAGATCCCTGGAAACCAATTCGTGTGAAATCGGTCAAGC CCCCAACGACTTTTAGCCCGTCTCAGACGGAGCACCGCCAAGATTCTTAC CGCCAGCAGCGCAATGAACTCGTACTTTGAACAGGCCTCCGGCTTTTATG GCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCACCAC GACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCTCTC GCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCCAGG ACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATACGGC GATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGATGC GGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCGGCG GGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGTGGA GCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAACAA TCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATTCCC GAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCATCGC GGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAACGC CGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCTGGA ATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCCAGC AGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTATCGC AGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAGACA TGGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGACTGG CTAGGTACAAATGGTCTGCGAAGACGCGGCCGACAGACATACACCCGCTA CCAGACGCTCGAGCTGGAGAAGGAGTTCCACACGAATCATTATCTGACCC GCAGACGGAGAATCGAGATGGCGCACGCGCTATGCCTGACGGAGCGGCAG ATCAAGATCTGGTTCCAGAACCGGCGAATGAAGCTGAAGAAGGAGATCCA GGCGATCAAGGAGCTGAACGAACAGGAGAAGCAGGCGCAGGCCCAGAAGG CGGCGGCGGCAGCGGCTGCGGCGGCGGCGGTCCAAGGTGGACACTTAGAT CAGTAGATCCTTAGATCCTTAGATCCTTAGATCCGTAGGGTGTATGTGGG ATTGGGCGAAATGACGCGGAGACAGATACAAAGCAACTATATTGTAACAA ATGAACTATTTACTTAAATGAATAATATTTAAATATTTTGATGGTACTTG TGCGAATACGAAACTTAACCTAAATCGAACCTAATGGAATTATTTCAAGC GTTTGAGCAGCAACCGAAAATACGTAAATGAAACAAAACTACAAACTAAT TAACTAGGCTAAGTAAATAAAAGTAGTGGAAGGAGCGCAGATTATAAACC TACTTAGAATTAAATGAGCAAAACAAACAATTTTAATTTAGTTCCAAACG AAAAAAAAATTCAAGAGGATTCGCTCGAAATGGAAACCTCTGTCCTGCCC CTTTGTTGCTTACTGCTATGTTTAAATTAATTTCGCGAAAAATACTCAAA AATTGAAACACAAAGAAAACAAAAAATGAAAGTATACCATTATAATGTTG AATGCGAGCAAAATTCTGTTGATATGAATTTTTGGTAAAAACATGTTCTA AACCAATTTAAGATACGTAACGAAGGATGCAAAAACAAAATGAAAACTAT TAAACTTTAACTTAAATATAAATAGAATTTGTTAGCCAAGTAAACATATT ACGACACGAAGAACAAACGTTTTCGGGAGTATCGAATATTTGAATGTGTA TAGTTTGTGCTTATTAAATAAAATAATGCAATTTTAGTTAACTCTGTTTA TTTGTAAACGAATTTGTTTAGTTCTCGCCCAAACGACTAGAGTGAAGCTG TTTCTTTAAGTAATGTGTAGTGTGTTTACTTTTTAAATTAAATTAATGCC TAATTTTATTATTATTATGTTTAGTTTAATGACAAGCGTTTATGAGATTA TCCGACAGAAGCGGCGAGAAGAGGAGTGCGACAAACCGTTTGCCCCGGCA AACGCAAATAAATTATTGGTTTTGAAAAAATCTAAAGAAAACAAAAAAAA AAAACAATGAGAAATCGAATCCGATTGTTGTGTTATTATTTTAGTTCTGC CATTGCGATTTTCCGTTCTCCCAGTGTAATTAGAGCCTGAGTTGTTTGAG AGAGTCTTCGCGGGCTACCCGCTTGCATGCGAAATTGCTTTTGATCTCGT TTTGAGCCGTTAATTGATCGTGAGTTGTACGCTCTATAGAGATACCCATA CCGATTAGCTATAACGATACCATACCGATACCAATACCATATATATAGTT TAGTGGATCCAACGAGCTGTGCTCGACTCAAGCCACAAGGCGCTCCGTGT GTGTGTCCCGATAATTGATCCTTCAGTTGAGTTTCCATGGTGGTCCCAGT TGGGGCCGTTCGTAACGAGGTCCTGCAGAAGATGTATACGTACTACCGCC TAAGATTCGATTATAGATATATTATATTTATAAATCTTGATATATATTTA TGTACTTATGTATGTGGGGATCGAGTCGAAATGGACAAACAATAAGAGAG TAATTCTGCGGAACGGAACGAAGGCAGATGCAAATACGTAAATAAGAATA AGTTAAATGTTATAGATTTTAAACGCATATGCGTGGATCGAATGGGATGT CCCCGCCACCGCAAACCAAGAATAGACGCTAAAATACAATACATAAATAT TTAAACGTGGATTATCGTAGCAACAGATATACGTAAAAGGAAGACGATTC GGTGAGGTCTTGCATACAGTACTGCATCCGACCACTTACCTACTACTTAC TTACCAGTGCATTCGTAGTAAATAGTTAAATAATCGCTACTTACTTGTAC ATTTGCTAGTGGCTTTTACTTTAAACTCTCTGACCCTCGGCCGAGCAGGC CTATCCATAAGAGACTACTACTTTTCCTATATACCTACTTCATCCGATCA GATCAGACCTACAGATACTTTGCGGTTACATTTTCTACTTGTAATTTCCC CTCCCCGCGATCGAAGATTGGACCCGCAGGCTCCGTTCATACTTAATCGA TGTAACTCTAATTTAATGCCATTCTATGTTAGCTCCGTAAGTTGTAAATT ATCAATATAAACTACACGTAAAAAGAACAAACACAAAACAAACAGCAACC AGTGAGAATGTGGAAAATGAAACAAATAAATTAAACAAAACGATTTAAAT AATTTAAAAGATGCCTTTGGATTATTAATGTGAAATAGTTGGTTTCGGAA TTGTAGGTAATTCGAAAGGATAGTTTTGCGGTACTCTTAAAATAGCAGTC CTTCGTTCTACATTTTTAATAGCAATATTCTCCATTTGGCGCCATACTTT CTTGGCTTAGGAAGTATCTTGTTCCAAGAAAGCCAATAAAACGTTAAGTT TTTCTTGCCGTGCTATCCAGGAATAAAATTTTCAGTGGAAATTCAAACCA TA
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Ubx-RA FBtr0083347 4729 Ubx-RB FBtr0083348 4600 Ubx-RC FBtr0083349 4678 Ubx-RD FBtr0083350 4651 Ubx-RF FBtr0083352 4627
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Ubx-PE FBpp0082797 380
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Ubx-PA FBpp0082793 389 Ubx-PB FBpp0082794 346 Ubx-PC FBpp0082795 372 Ubx-PD FBpp0082796 363 Ubx-PF FBpp0089155 355
Comments
	Designated Ubx transcript Ia in literature (FBrf0049816).
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_169729
Synonyms
	CG10388-RE UBXIA Ubx-RE
References ( 2 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]