Transcript Dmel\Ubx-RD

General Information
Symbol	Dmel\Ubx-RD	Species	D. melanogaster
Annotation Symbol	CG10388-RD	FlyBase ID	FBtr0083350
Feature type	mRNA	Associated gene	Dmel\Ubx
Created / Updated	2004-06-05/2004-06-05

Evidence Rank	Weakly Supported	Length (nt)	4651
Evidence Score	3

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 16 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EK170414 EK084347 EK157028 EK063846 EP02129 EK155715 EK238919 EK049458 RE71819 EK108158 EK020219 EP01057 LD09363 EK117325 EK213843 RE46542
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	ATGAATGAACGAGAGGCGCCCACCCCGATAAACTTAAACTGAACGAACAC TCAAGAGAGAGCGCAAGAGCGCTCAAAAACAATCTGGTTTTGAGCGTTTC GCTGGCTCTCTGTTTCTGTTTTCCACTCGTTTTTAGGCCGAGTCGAGTGA GTTGAGTCGGCAGAGCAAAGTCAAAACACTGGCAACTGCGATTTGGTGCC ACATTCGTTCGATGGCAACGGATTGGATAACAGGCGCGCGCTTTGTTTTA TTATCCACATTATCAGCGGCATTATTGTTATTATTGGCCCTCAGCGCTTT ACCGCTCGCCCACGCGTCCGCCCGTGAATGCCGCGCGGAAAAGTCGCTTT CCACTAGATTGGCGTCCAGATTCGAGGAAATCCGTCAGCAGACGCATTCG CGCCCGTTCGGTCAGCACTATGGCTAATAATCGTTCAAATCGTTAAAACC ATAAAAATAATAATAATAATTGCAATAACAATAAACATAGTAATAATCGT AACGCTTACGAGCCTTTGATAGTGCCAAGGCAAGCGCAATCCAAGTATTC AAATTCGAATTCAATTAACAGCAAAGTGCAATTGGCTAAAAACCGAAACC AAAACGCAACAAAGTATACGAAACACTTGTGAAACCGTACAAACAATTGT GGAAAAAAATTTAAAGATTATTAAGATTGAAGTCTCAATAAACATTAGTG CTTAAATAAATTTAAAACGACCCGCGTGGAGAGTGCAATAAAAAGAATAA CTTTTGAAATAAATATTTACCAAACAGAAAAATATTTTATAAATATTTAA ATAAGTGAAAAACAAATTGGTTACTCTGAAACAAAGAAAATTCAAATTGG TGCTAAAACAAAGGAGAAAAAATTTCAAGAATATTTTACAAATAATAAGA CATATTTAACTATATAAAACCAAACTTAATCAACAAAGACTTGGAGTGAA AATATAAAATAAATTTTAAAAAGAGTTTAACAAAATTTGTTTAAATCCAA AGGAGGCAAAGGAACAGCACAGAAAGCGAGGAAACACTCAAATAAAATCC GCCAAAAATCGCAGATCCCTGGAAACCAATTCGTGTGAAATCGGTCAAGC CCCCAACGACTTTTAGCCCGTCTCAGACGGAGCACCGCCAAGATTCTTAC CGCCAGCAGCGCAATGAACTCGTACTTTGAACAGGCCTCCGGCTTTTATG GCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCACCAC GACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCTCTC GCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCCAGG ACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATACGGC GATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGATGC GGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCGGCG GGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGTGGA GCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAACAA TCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATTCCC GAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCATCGC GGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAACGC CGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCTGGA ATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCCAGC AGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTATCGC AGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGACTGGC TAGGTACAAATGGTCTGCGAAGACGCGGCCGACAGACATACACCCGCTAC CAGACGCTCGAGCTGGAGAAGGAGTTCCACACGAATCATTATCTGACCCG CAGACGGAGAATCGAGATGGCGCACGCGCTATGCCTGACGGAGCGGCAGA TCAAGATCTGGTTCCAGAACCGGCGAATGAAGCTGAAGAAGGAGATCCAG GCGATCAAGGAGCTGAACGAACAGGAGAAGCAGGCGCAGGCCCAGAAGGC GGCGGCGGCAGCGGCTGCGGCGGCGGCGGTCCAAGGTGGACACTTAGATC AGTAGATCCTTAGATCCTTAGATCCTTAGATCCGTAGGGTGTATGTGGGA TTGGGCGAAATGACGCGGAGACAGATACAAAGCAACTATATTGTAACAAA TGAACTATTTACTTAAATGAATAATATTTAAATATTTTGATGGTACTTGT GCGAATACGAAACTTAACCTAAATCGAACCTAATGGAATTATTTCAAGCG TTTGAGCAGCAACCGAAAATACGTAAATGAAACAAAACTACAAACTAATT AACTAGGCTAAGTAAATAAAAGTAGTGGAAGGAGCGCAGATTATAAACCT ACTTAGAATTAAATGAGCAAAACAAACAATTTTAATTTAGTTCCAAACGA AAAAAAAATTCAAGAGGATTCGCTCGAAATGGAAACCTCTGTCCTGCCCC TTTGTTGCTTACTGCTATGTTTAAATTAATTTCGCGAAAAATACTCAAAA ATTGAAACACAAAGAAAACAAAAAATGAAAGTATACCATTATAATGTTGA ATGCGAGCAAAATTCTGTTGATATGAATTTTTGGTAAAAACATGTTCTAA ACCAATTTAAGATACGTAACGAAGGATGCAAAAACAAAATGAAAACTATT AAACTTTAACTTAAATATAAATAGAATTTGTTAGCCAAGTAAACATATTA CGACACGAAGAACAAACGTTTTCGGGAGTATCGAATATTTGAATGTGTAT AGTTTGTGCTTATTAAATAAAATAATGCAATTTTAGTTAACTCTGTTTAT TTGTAAACGAATTTGTTTAGTTCTCGCCCAAACGACTAGAGTGAAGCTGT TTCTTTAAGTAATGTGTAGTGTGTTTACTTTTTAAATTAAATTAATGCCT AATTTTATTATTATTATGTTTAGTTTAATGACAAGCGTTTATGAGATTAT CCGACAGAAGCGGCGAGAAGAGGAGTGCGACAAACCGTTTGCCCCGGCAA ACGCAAATAAATTATTGGTTTTGAAAAAATCTAAAGAAAACAAAAAAAAA AAACAATGAGAAATCGAATCCGATTGTTGTGTTATTATTTTAGTTCTGCC ATTGCGATTTTCCGTTCTCCCAGTGTAATTAGAGCCTGAGTTGTTTGAGA GAGTCTTCGCGGGCTACCCGCTTGCATGCGAAATTGCTTTTGATCTCGTT TTGAGCCGTTAATTGATCGTGAGTTGTACGCTCTATAGAGATACCCATAC CGATTAGCTATAACGATACCATACCGATACCAATACCATATATATAGTTT AGTGGATCCAACGAGCTGTGCTCGACTCAAGCCACAAGGCGCTCCGTGTG TGTGTCCCGATAATTGATCCTTCAGTTGAGTTTCCATGGTGGTCCCAGTT GGGGCCGTTCGTAACGAGGTCCTGCAGAAGATGTATACGTACTACCGCCT AAGATTCGATTATAGATATATTATATTTATAAATCTTGATATATATTTAT GTACTTATGTATGTGGGGATCGAGTCGAAATGGACAAACAATAAGAGAGT AATTCTGCGGAACGGAACGAAGGCAGATGCAAATACGTAAATAAGAATAA GTTAAATGTTATAGATTTTAAACGCATATGCGTGGATCGAATGGGATGTC CCCGCCACCGCAAACCAAGAATAGACGCTAAAATACAATACATAAATATT TAAACGTGGATTATCGTAGCAACAGATATACGTAAAAGGAAGACGATTCG GTGAGGTCTTGCATACAGTACTGCATCCGACCACTTACCTACTACTTACT TACCAGTGCATTCGTAGTAAATAGTTAAATAATCGCTACTTACTTGTACA TTTGCTAGTGGCTTTTACTTTAAACTCTCTGACCCTCGGCCGAGCAGGCC TATCCATAAGAGACTACTACTTTTCCTATATACCTACTTCATCCGATCAG ATCAGACCTACAGATACTTTGCGGTTACATTTTCTACTTGTAATTTCCCC TCCCCGCGATCGAAGATTGGACCCGCAGGCTCCGTTCATACTTAATCGAT GTAACTCTAATTTAATGCCATTCTATGTTAGCTCCGTAAGTTGTAAATTA TCAATATAAACTACACGTAAAAAGAACAAACACAAAACAAACAGCAACCA GTGAGAATGTGGAAAATGAAACAAATAAATTAAACAAAACGATTTAAATA ATTTAAAAGATGCCTTTGGATTATTAATGTGAAATAGTTGGTTTCGGAAT TGTAGGTAATTCGAAAGGATAGTTTTGCGGTACTCTTAAAATAGCAGTCC TTCGTTCTACATTTTTAATAGCAATATTCTCCATTTGGCGCCATACTTTC TTGGCTTAGGAAGTATCTTGTTCCAAGAAAGCCAATAAAACGTTAAGTTT TTCTTGCCGTGCTATCCAGGAATAAAATTTTCAGTGGAAATTCAAACCAT A
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Ubx-RA FBtr0083347 4729 Ubx-RB FBtr0083348 4600 Ubx-RC FBtr0083349 4678 Ubx-RE FBtr0083351 4702 Ubx-RF FBtr0083352 4627
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Ubx-PD FBpp0082796 363
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Ubx-PA FBpp0082793 389 Ubx-PB FBpp0082794 346 Ubx-PC FBpp0082795 372 Ubx-PE FBpp0082797 380 Ubx-PF FBpp0089155 355
Comments
	Designated Ubx transcript IIa in literature (FBrf0049816).
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_169728
Synonyms
	CG10388-RD UBXIIA Ubx-RD
References ( 2 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]