Transcript Dmel\Fmr1-RD

General Information
Symbol	Dmel\Fmr1-RD	Species	D. melanogaster
Annotation Symbol	CG6203-RD	FlyBase ID	FBtr0082199
Feature type	mRNA	Associated gene	Dmel\Fmr1
Created / Updated	2004-06-05/2004-06-05

Evidence Rank	Strongly Supported	Length (nt)	4278
Evidence Score	11

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 32 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	RE55657 EK196532 EK271252 GM30906 EK008739 AT12610 EK157839 EK068224 EK163357 EK166762 EK053438 LD28903 EK049622 RE17792 EK136343 SD08054 AT08945 SD02107 RE07749 EP02024 EK139742 EK110951 AT10304 SD18431 EK154102 EK299622 SD03860 EK248323 EK054953 EK157812
End(s) extend beyond the annotated transcript, internally consistent	EK042559 EP18717
Sequence
	GTTTAGCTAGGAATTATCTGGCCCCCAAAATAACTTCAAAATTTTCTTCA ACTATTTTTTTTATTAGTGTGTCAATATATAGTCTCCCTCTCCAGATACA AAAATTCAAAAATACCAAAAACAAAACCATTCCATATTATTATTGATTAC AGGCAACATTTGAAGCAGCAGCCGCCAAGCAAAAGACTGATTTGAGTACA AGGAACTAGAAGCAGGAACGCGAGGTTTCTGCCACTGCACACTGAATTGA GCCCCAGATAACGCGGCAAACTGCAGTCGACGGGGAAAAGTCGGGAGTTG AAGGCTGGGCAGCATCAGCATCAGCAGCAGGAGGGACAGGGACGGACGGC GAAGAACCACCAGAACCAGAACCAAAACAAAGCGGATAAACCAGGAGGCA CTACGTCTGGCGATATGGAAGATCTCCTCGTGGAAGTTCGGCTCGACAAT GGCGCCTACTACAAGGGCCAGGTGACAGCTGTCGCCGATGATGGCATCTT TGTGGATGTGGACGGCGTGCCCGAGAGTATGAAATATCCATTTGTGAACG TTCGCCTGCCGCCCGAGGAAACCGTTGAGGTGGCCGCACCGATCTTCGAG GAGGGCATGGAAGTGGAGGTGTTCACGCGCACGAACGATCGGGAAACCTG CGGCTGGTGGGTGGGCATTATTAAAATGCGCAAAGCGGAAATCTATGCGG TCGCGTACATCGGTTTTGAGACGTCCTACACCGAAATCTGTGAATTGGGT CGTCTGCGCGCCAAAAACTCGAATCCGCCAATTACAGCCAAGACCTTCTA CCAGTTCACGCTGCCCGTGCCCGAGGAGTTGCGCGAAGAAGCCCAGAAGG ATGGTATACACAAGGAGTTTCAGCGCACAATCGATGCCGGCGTGTGCAAC TACAGTCGCGATCTGGACGCCCTGATTGTCATCTCCAAGTTTGAGCACAC TCAGAAGCGAGCCAGTATGCTCAAGGATATGCATTTTCGTAATCTCTCAC AAAAGGTTATGCTGTTGAAAAGGACTGAAGAAGCTGCCCGTCAGCTCGAA ACAACTAAACTGATGAGCCGTGGAAACTACGTTGAGGAGTTCCGTGTGCG TGACGATCTCATGGGTTTGGCGATTGGCTCGCATGGCTCGAATATTCAAG CGGCACGCACTGTGGACGGCGTCACCAACATCGAGCTGGAGGAGAAGTCC TGCACATTCAAAATCAGCGGAGAGACCGAGGAGTCTGTGCAGCGTGCCCG CGCGATGCTCGAATACGCCGAGGAGTTCTTCCAGGTGCCCAGGGAGTTGG TGGGCAAGGTGATTGGCAAGAATGGGCGCATTATCCAGGAGATTGTGGAC AAGAGTGGCGTGTTTCGAATCAAGATCGCTGGCGACGATGAACAGGATCA GAACATACCACGTGAGCTGGCGCATGTACCCTTTGTGTTCATTGGCACCG TGGAGAGCATTGCAAATGCCAAAGTGCTGTTGGAGTATCATCTGTCGCAC CTGAAGGAAGTAGAACAGTTGCGTCAGGAGAAGATGGAGATTGATCAGCA GCTTCGCGCCATCCAGGAATCCTCCATGGGCTCCACACAGAGCTTCCCAG TGACGCGGCGCTCTGAGCGCGGCTACAGCAGTGACATTGAGTCGGTGCGC TCTATGCGCGGCGGTGGTGGCGGCCAGCGTGGTCGTGTACGCGGACGTGG TGGTGGCGGTCCTGGAGGTGGCAATGGCCTGAACCAGCGCTACCACAACA ATCGCCGCGACGAGGATGACTACAACTCGCGGGGCGATCATCAGCGTGAC CAGCAGCGTGGCTACAACGATCGCGGCGGTGGTGACAACACTGGCAGCTA TCGTGGAGGCGGTGGTGGCGCCGGTGGTCCTGGCAACAACAGGCGCGGCG GAATCAACCGCCGGCCGCCACGCAACGATCAGCAGAATGGCAGGGACTAT CAGCACCACAACCACACCACCGAAGAGGTGCGGGAGACCCGTGAAATGAG CAGCGTGGAGAGAGCGGACAGTAACTCATCGTACGAAGGTAGCTCGCGGA GGCGCAGAAGGCAGAAGAACAACAATGGACCCAGTAACACAAACGGAGCT GTTGCCAATAACAACAACAAACCTCAGTCGGCGCAGCAGCCACAACAGCA GCAGCCGCCGGCGCCTGGGAATAAGGCGGCACTAAATGCCGGAGATGCCA GCAAACAGAACAGCGGCAATGCGAACGCCGCTGGCGGTGCGAGCAAGCCG AAGGATGCCTCACGCAACGGCGACAAGCAGCAGGCGGGCACACAGCAGCA ACAGCCATCGCAGGTACAACAGCAGCAGGCGGCACAGCAGCAGCAGCCGA AACCGCGACGCAACAAGAATCGCAGCAACAACCACACGGACCAGCCATCC GGACAGCAGCAGCTGGCGGAGAATGTCAAAAAGGAGGGCCTGGTCAATGG CACGTCCTAAGCCGAGTGGCCAAAGCGGTAGGAGGAGCAACAGCTCACAG ATGGCTAGAACAACATGAACACGAATTGCACATCGTTCGACGGAGTAACA ATGTTGTATGCGCAGCGGGGCAGTTTAATAATCATGTTGATGTCCTTGAA TGTAGCCGCCACATAACACAACAACCAACAACAACCACACAACACAACAC AACTCAACAACAAACAAAACATCCGATCAACATCAGACACTAGAACAACA TCATCAGCCAACAACAAGCTCCACTAACCAATTGTTTGAGAAACTATAAG AGTAACTAAAAAAATAGGAATCGAAAAATTATATACATGAAATATGTAAC AAATGTGAAAGCATATACTAACACACACACACACTCACACAAGGATACAC TCACACACAACCACACACACAATACAGTTCGAATTATACACAAAAAGGAG GAAGTAATAAAAGAAAATTCATGCCTAGGCTTATAATTTGAATTGAAACT AAAAAAGCTTCAATAACAATCAAAATGAATTATATTTATGTATAAAAGAA ACTCAAAGGCAATTATTAACAAGCAAAACGAACGAATCGAAAGTGAAACA TTGAATATGTAAACTAAAACTTTAACTCTAATCCGGGCAACTAGGCGTAG TTTTTCGAAAAGAAAATCTAAAGAAAACCTGACGAAATGGGCGCTTCAAA AGCGCCCCTTTGCGTCAACTTGAAAAGTTTCTAGTTATATGCATATTATA ATAAAACGAGAATGATATAATTGCATTTTTGTTTTGGTTAAATTAATTTT AGTTGTGTCTGTCATGTGTTTGTTTTTGTGTATAATTCGTGCATGCAACA ACTTAATCGCCTAGCAGGTTTTTCTACATTATCATTATTTTTGTATTATT ATATTTTAGTTTACTAATGTAAATGCCCAGGCGCGTTTAGAAGTTGCTTA TAAATTTCGAAAGCCACGGCGAACAATTTCATTTGCAGGTGAATGTCTGC AAAGGACTTGTTCGTCGTGAGCTTTTGCATCGTTTCATTGTTTCATTGTT TATTTTGTTCGTTACAACATGGAAATCCTCTCTTAATTGTATAATTTTGT ATTTATTTACTATTATTAACACATCCCACACACCACACACGCCACACTCA CCCGCATACACGAATATCAATTCTCACACACACGAGCTCGCTCATACAAA ACAGAAGGGAAACGCATTAATTTTGATTTTGTTTTATAAATATATAATTT ACTTCGCCAAACCTACAAAGCGTATACTAACTTAGTCCTCTATTAAATAC TCTTAAATTATTTAAAACAAGTAAAACGTGCCGAGTCGGGAGAGGAGCAT TGAACACAATCATCGAGTGACGCGAATCATTTCAATTGAATCATAATAGA AGACCCAACTATGGAATATAAATACACAATGTAAAGCCACCATAAAGAAA CCATCTAAGAACAAATAGCAAGAAGCAGAACAGAACAATTCTTTCCTCTT ATTTGGAAGAACAGTGTCAATAATATGTAAGAAAGGCAAACCACACATTT TAACATACATTAAAGAAGGAGATAACGATAATGGTACCGATAAAGATAAA TCTAAATAATGTTGTGTAATTCAAATTAAAACAAATAAAACAAAAATCCA ACTAAATGGAAACGGCATAAAAGAAACGTAATAATATAAATATAATGAGA AAAATGTGCGATTTAAATTTATTATTTATATAAAGATGAACTTATAAAGA ATAGAAATATAGCAAGTAAATTTTATTAATTTAAAATTTATATATATAAA ACAAAACACAAACCATCAAGCTAAAGAC
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) Fmr1-RA FBtr0082197 4441 Fmr1-RB FBtr0082196 2267 Fmr1-RC FBtr0082198 4432 Fmr1-RE FBtr0082200 3895
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) Fmr1-PD FBpp0081677 681
Derived from OTHER transcripts	Name FlyBase ID Length (aa) Fmr1-PA FBpp0081675 684 Fmr1-PB FBpp0081674 529 Fmr1-PC FBpp0081676 681 Fmr1-PE FBpp0081678 643
Comments
	<new comment>CG6203-RD is based on EST evidence which supports an alternate transcription start site for Fmr1. Although one complete transcript structure has been annotated, there is no direct evidence to indicate which of the splice variations at the 3' end is used with this 5' end.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_169325
Synonyms
	CG6203-RD Fmr1-RD
References ( 2 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]