Transcript Dmel\sdk-RA

General Information
Symbol	Dmel\sdk-RA	Species	D. melanogaster
Annotation Symbol	CG5227-RA	FlyBase ID	FBtr0070133
Feature type	mRNA	Associated gene	Dmel\sdk
Created / Updated	2000-01-06/2004-06-05

Evidence Rank	Strongly Supported	Length (nt)	8839
Evidence Score	15

Map ( GBrowse )
cDNA Clones Consistent with the Transcript ( 28 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	EK193901 EK142851 EK104962 EK136005 EK288304 LD42472 LD26517 LD07652 EK194559 GM02010 LD21779 EK280755 EK266096 EK286529 EK068632 EK022138 LD22445 LD38885 EK295308 EK176337 EK276850 EK147233 EK148562 EK048462 EK286905 EK298625 EK202957 IP16111
End(s) extend beyond the annotated transcript, internally consistent
Sequence
	AGTTCGTTTTGTGCGCGCGTAGTGAACGGTTGTCTTTCGGTTGCTCGTCG GGGAGTTGCAAATTCAGCGACAGCAGCAACTACAAATGGCGACTTGTGCC TGTCGGACCCTCGAGTTCATTGTTAATTGTTAATCGTTGTGGTGCTAAGC GTTGGCCGAACGGTTTATGGCCAAAAAAGATGTGAGCGATGTGTAATTAA AACTAGACTTTTCACTAAAAACTAGAAGAGCGAAGGAAGGCCGCTAAGAA AACAAAGCGAAATCCCAGAAATACGAATACCGAAAGGCAACAACAAATGC TCAAATCTGCGGCGTCGTCGCTGCGTCGACGTCGTCCAAAAACAACAATA ACAGCAACATTAGCCATCGAGATGCCGTCGCAGCCGAAGTTGGCGTCTCT GCTTGCAGTGCTGGTTTTGCTCTGCTACTGCGACAGCTGCTTTTTTTGTT ACGCGGATGCCAATCTACAGCAGCAGAATTCAATCGTTCAACAGCAGCAA CTTCAGGCTCCTCGGTTTACCACACATCCATCGTCATCGGGATCGATTGT CAGCGAGGGCAGCACCAAGATACTTCAGTGTCATGCGCTGGGATACCCGC AACCCACATATCGATGGCTAAAGGACGGCGTCCCCGTGGGCGACTTCTCA TCCAGCCAGTTCTACCGATTCCACAGCACCCGGCGCGAGGATGCGGGCAG CTATCAGTGCATCGCCAGAAATGATGCCGGATCCATATTCAGCGAAAAGA GCGACGTCGTCGTGGCCTACATGGGCATCTTTGAGAACACCACAGAGGGT CGTCTGACGGTGATCAGTGGTCACCCTGCGATATTCGATATGCCCCCCAT TTGAATCCATACCCGTGCCGTCGGTTATGTGGCAATCGGAGGATGGACCT CTGAATTACGACATCAAGTACGCCTTCACCCACGCCAACCAGTTAATTAT TTTAAGTGCTGACGAAAACGATCGCAAGGGATACCGGGCTAAGGCCATTA ACACGCAGTTGGGCAAAGAGGAGAGCAGCGCCTTTGTGCACCTGAACGTC AGTGGAGATCCGTACATCGAGGTGGCGCCCGAAATCATAGTGCGCCCGCA GGACGTTAAGGTCAAAGTTGGTACCGGAGTGGTTGAGCTGCAGTGCATTG CGAATGCCAGGCCCTTGCACGAACTGGAGACGCTTTGGCTGAAAGACGGT CTCGCCGTAGAAACTGCCGGAGTGAGGCACACTCTCAACGATCCATGGAA TCGAACGTTGGCCCTGCTGCAGGCGAACAGCTCACATTCCGGGGAATACA CCTGCCAGGTGCGATTGCGCAGTGGTGGCTACCCAGCCGTCAGTGCTTCG GCTCGCCTCCAAATCCTCGAGCCGCCGCTCTTTTTTACACCCATGCGGGC GGAAACCTTTGGCGAATTCGGAGGACAGGTGCAGCTAACCTGCGATGTGG TCGGCGAACCCACGCCCCAGGTCAAGTGGTTCAGGAACGCAGAATCGGTG GATGCACACATTGAGAGTGGAAGATACACGTTGAACACGGATAATACGCT GGTAATTAAGAAACTAATCCTGGATGATGCTGCCATGTTTCAGTGTTTGG CCATCAACGAAGCGGGGGAGAATTCGGCGAGCACCTGGCTGCGCGTAAAA ACATCGGCTCCAATTATGGAGCTGCCGCCCCAAAATGTGACCGCCTTGGA TGGCAAGGACGCAACTATTTCCTGCCGGGCAGTTGGATCGCCCAATCCCA ACATAACCTGGATATACAATGAGACACAACTGGTAGATATATCCAGCCGG GTGCAGATACTTGAGTCGGGTGACCTGCTCATCTCGAACATCCGATCTGT GGACGCCGGCCTGTATATCTGCGTACGAGCCAACGAGGCGGGCAGCGTCA AGGGCGAGGCCTATTTGAGTGTTTTGGTGCGGACGCAAATCATCCAACCG CCTGTGGACACAACGGTGCTACTTGGCTTAACGGCCACCCTGCAGTGCAA GGTGTCCAGTGATCCCAGTGTCCCGTACAACATCGACTGGTATCGCGAGG GTCAGTCGTCGACGCCCATCAGTAATTCGCAGCGCATTGGTGTCCAGGCG GACGGTCAGCTAGAGATCCAAGCGGTGCGGGCGAGCGACGTCGGGAGTTA TGCCTGTGTGGTCACTTCTCCCGGGGGAAATGAGACGCGAGCCGCCCGCC TCAGTGTCATCGAACTCCCGTTCCCACCCAGCAATGTGAAGGTGGAACGA CTGCCGGAACCGCAACAGCGCAGCATCAACGTGTCCTGGACTCCGGGATT CGATGGCAACAGTCCAATATCCAAATTTATTATCCAGCGACGTGAGGTCT CAGAATTGGAAAAATTCGTAGGTCCAGTTCCAGACCCTCTGCTCAACTGG ATTACCGAGCTGAGCAATGTCTCGGCGGACCAACGTTGGATCCTGCTCGA AAATCTCAAGGCGGCCACCGTTTATCAGTTTAGGGTTAGTGCTGTCAATC GGGTGGGCGAGGGTTCGCCATCGGAACCCAGTAACGTCGTCGAGCTGCCC CAGGAAGCTCCTTCGGGTCCACCGGTGGGATTTGTTGGATCCGCCCGCTC GATGTCAGAGATCATCACGCAATGGCAGCCACCGTTGGAGGAGCATCGCA ATGGCCAGATCCTGGGATACATTCTGCGGTACCGCCTATTCGGTTACAAC AATGTGCCTTGGTCCTACCAGAATATTACAAACGAAGCGCAGCGCAACTT CCTGATTCAAGAACTGATCACCTGGAAGGATTACATCGTGCAGATCGCAG CATACAACAACATGGGCGTGGGTGTCTACACCGAGGGCTCCAAAATTAAA ACCAAGGAAGGAGTTCCAGAAGCACCCCCCACAAATGTAAAAGTAGAAGC TATAAACTCGACGGCAGCCAGGTGCCGGTGGACTCCACCCAATCCGCAGC AGATTAACGGCATCAACCAGGGCTATAAGATCCAGGCATGGCAACGTCGG TTGATAGATGGCGAGTGGAGGGACATTGAGCGACGAATGAAGACAGTGCC ACCTAGTCTGATTGATCCACTGGCGGAACAGACAGCTATCCTCGGAGGAC TTGAAAAATTTACCGAGTACAATATTAGTGTGCTCTGCTTCACGGACCCT GGCGATGGTGTGGCCAGTAGTCAAGTGGCAGTTATGACCATGGATGACGT ACCCGACGAGGTGACTGGATTGCATTTCGATGACGTCTCCGATAGATCCG TAAAAGTTCTATGGGCGCCACCGCGCGCTTCGAACGGTATCCTAACGGGC TATACGGTTCGCTACCAAGTCAAGGATCGTCCAGATACCCTGAAATCCTT TAATCTGACAGCGGATGATACAGAGTTGACAGTGAACCAATTGCAGGCTA CCACGCACTATTGGTTTGAGATCGTCGCGTGGACGCGTGTGGGCAGTGGA ATTCCGAAAACAGCCACCATTCAGTCTGGCGTAGAGCCAGTTCTGCCGCA CGCACCCACTGCTCTGGCATTATCCAATATCGAAGCCTTCTCTGTTGTTC TGCAGTTCACTCCGGGCTTTGATGGCAACTCCAGCATTACCAAATGGAAA GTGGAGGGACAAACGGCCAGAAATATGACATGGTTTACCATTTGCGAGAT TAATGATCCCGATGCAGAGACCTTGACCGTCACTGGCTTGGTGCCGTTTA CCCAGTACAGACTGAGATTGAGTGCTAGTAATGTGGTTGGTAGCTCGAAG CCCTCGGAGGCAACCAAGGATTTCCAGACGATCCAAGCCAGGCCCAAACA TCCACCGTTTAACGTAACCGTGCGGGCAATGAGTGCTCAACAACTGCGTG TTCGCTGGATTCCACTGCAACAAACTGAATGGTATGGAAATCCCAGGGGC TATAATATATCCTACAAGCAGCTGGTCAAAACTCCCGGGACCATTAAATA CGTACCCCGGTCGGTGGTAATCGAAGATCACACCGCCAACTCCCACGTGT TAGATAGCCTGGAGGAGTGGACACTGTATGAGGTGAAAATGAATGCCTGC AACGATGTGGGATGTTCTAAAGAGAGTGACACTGCCGTGGAGAGAACTCG CGAAGCTGTTCCTAGCTATGGACCCCTGGATGTCCAGGCTAATGCCACAT CATCCACCACAGTGGTTGTGCAATGGGGTGAGGTGCCCCGACAACACAGA AATGGTCAGATAGATGGCTACAAGGTGTTCTATGCCGCTGCAGATCGGGG ACAACAGGTGCTGCACAAGACGATACCCAATAACGCCACATTTACCACAA CCTTGACGGAACTGAAAAAATATGTGGTTTACCATGTTCAGGTTCTGGCC TACACCAGATTGGGTAATGGTGCTCTAAGCACCCCACCCATTCGAGTTCA GACCTTTGAGGATACCCCTGGAGTGCCATCGAACGTTAGTTTTCCGGATG TCTCCTTGACCATGGCTCGCATAATTTGGGATGTGCCTGTGGATCCTAAT GGCAAGATCTTGGCTTATCAGGTCACGTACACATTAAATGGTAGTGCCAT GCTGAACTACAGCCGAGAGTTTCCGCCTTCCGATCGCACATTCCGGGCGA CGGAATTACTTCCCGGAAAGTATTACAGCTTTAGTTGTACGGCTCAAACG CGACTGGGATGGGGAAAAATAGCTACTGCTCTCGTGTACACTACAAACAA CAGGGAGAGACCTCAGGCACCTTCGGTTCCGCAAATATCACGCAGTCAGA TTCAGGCCCATCAAATCACCTTCAGTTGGACACCAGGAAGAGATGGCTTT GCGCCACTTCGCTACTACACAGTGGAAATGCGTGAAAACGAGGGCAGGTG GCAACCACTTCCAGAGAGGGTGGATCCATCTCTTAGTTCCTTTACAGCAG TTGGTCTGAGACCCTATATGACATATCAATTCCGCATACAGGCCACCAAT GACTTGGGACCATCCGCCTTTAGTCGGGAAAGTGTGATCGTGAGAACTTT ACCCGCTGCTCCGGCAGTGGGAGTTGGAGGTCTCAAGGTAGTTCCCATAA CCACAACTTCGGTGAGGGTGCAATGGAGTGCTCTGGAGACTGCATTGTGG AATGGTGATGCCTCAACTGGTGGCTACAGGATTTTATATCAACAACTTTC CGATTTCCCCACCGCCCTGCAGTCTACACCCAAAACGGATGTGCACGGCA TCAATGAGAACAGTGTGGTTCTGTCGGATCTTCAACAGGATCGCAACTAT GAAATTGTGGTGCTACCATTTAATTCCCAGGGCCCTGGGCCAGCCACACC CCCAGCAGCGGTCTATGTGGGCGAAGCGGTGCCGACTGGGGAACCGAGAG CCGTAGATGCAGCACCCATTTCCAGCACAGAAGTGCGATTACTGTGGAAG CCACCAAAGCAGAGCATGCAGAATGGAGATATTTTAGGATATAAGATCTA CTACCTGGTTACTTATTCACCGCAAGCGTTGGAACCAGGTCGCAAATGGG AGGAGGAAATCGAGGTTGTTTCGGCCACGGCAACTTCGCACAGTCTCGTG TTCCTTGATAAGTTCACCGAGTATCGCATCCAACTGCTGGCCTTCAATCC GGCGGGAGATGGACCACGATCCGCCCCAATTACCGTGAAAACACTGCCAG GAGTACCAAGTGCTCCACTTCACCTTAGATTTTCAGATATCACTATGCAG AGTTTGGAGGTTACCTGGGATCCACCAAAGTTCCTCAACGGTGAAATCTT GGGGTACTTAGTCACGTACGAAACCACCGAGGAGAATGAAAAGTTCAGCA AGCAAGTGAAACAAAAGGTATCTAATACAACACTGCGTGTTCAAAATCTC GAGGAAGAGGTCACCTACACATTCACTGTCCGTGCTCAAACGTCCGTCGA TTACGGCCCGGGTATAAGTGAGAATGTGACGACAGGACCCCAAGATGGAT CCCCAGTTGCGCCGCGTGATCTCATCCTGACCAAGACGCTATCCAGCGTG GAAATGCATTGGATAAATGGTCCTTCTGGGCGGGGACCCATTTTGGGCTA TCTTATCGAGGCAAAGAAGCGAGACGACTCACGCTGGACAAAAATCGAGC AGACCAGAAAGGGCATGATGCAGGATTTTACGGTCAGCTATCACATACTG ATGCCCTCCACTGCGTACACTTTTCGTGTGATTGCCTATAACCGTTACGG CATTTCGTTTCCCGTGTACTCCAAGGACTCGATCCTGACACCCTCCAAAC TCCATCTGGAATATGGTTACCTGCAGCACAAGCCCTTTTATCGGCAAACC TGGTTTATGGTTTCGCTGGCGGCGACTTCGATTGTGATCATCGTGATGGT TATTGCTGTGTTGTGTGTCAAGAGCAAGAGCTATAAATATAAACAAGAGG CACAAAAGACTCTAGAGGAATCTATGGCCATGTCAATTGACGAGCGACAA GAGTTGGCTCTGGAGTTGTATCGCTCTCGTCACGGAGTTGGAACTGGTAC CTTGAACAGTGTAGGCACTCTGCGAAGCGGTACCTTGGGGACTCTGGGCA GAAAGTCTACCAGTCGACCGCCGCCGGGTGTCCATCTCGGCAAGAGTCCG CCACGCCCATCGCCCGCTTCGGTGGCGTATCACAGCGACGAGGAGAGCTT GAAGTGCTACGACGAAAATCCAGACGACAGCAGCGTGACCGAGAAGCCCT CGGAGGTCAGCAGCTCGGAGGCATCGCAGCATTCGGAGAGCGAAAACGAG AGCGTGCGCAGCGACCCCCACTCCTTTGTGAATCACTATGCCAACGTGAA TGACTCACTGCGACAGTCGTGGAAGAAGACCAAGCCGGTGCGAAACTACT CCAGCTACACCGATTCGGAGCCGGAGGGCAGTGCAGTGATGAGCCTCAAT GGTGGCCAGATTATCGTCAATAATATGGCCAGGTCGAGGGCACCACTGCC CGGCTTCTCGTCATTCGTCTGACAATCAACTGAGTTCTAAGATCTAAGCA CCAGTAGCAACGGCACCGTCATCCGCGAGACCTTCGTCTAGGCTGAGAAC GAGGAGGGTCCGAAGAAGGAACCCGGAGCTGGGGGGTTGGCTGGGGCCAC TCGAACCCGTTGGAGGACGACACACACACCCACATATCAGACAGGCCCTC CTGCCCTCAGCCCCTCCACCTTCACGACGATACGCTGCTACAGGGATATA CATATTACTTAATACCAGACATTCAGTAAGATTATCTTGTATGCATTTAG TTTGAGTTCTTAATTATGTGCTTTTTACGTTGGGTTGTGCACTTCCGCGT CTTAACGTTATCCTTTTAACTAAAAATGTTTGTATGCCCAGTACTTCCCA TACTCGTAAAACGTATAAATTTGACCAACAGGCATTAATTGAAGTAATAT TTTTAAATATGCATAACCTAGTGTAAGGAGCACATTATTTTCAGCGTCAG TTTCCCAGCATGACTCTGCTCCTATTTTATAGTATTTATTTTTGGATGTA CAGTGTGAGTGCGATGCTGCCTGCCACGCCTCCAGATGTGGCATTTATGG AATAGGGCGCGACAAATCGAATCCGAATCCTGTGATAAAACGATTTCCTT GTGCCCTAATAAGTTTTTCCAATGATTTCCAAGTGTGTTCAGCGCGTGGC AGGTAGTCTGGTCTTTTAAGTGACTGTGAGTGTGAGTGACGTACGCGCTT CGTCTGCGCAATCTCATTATATATAAAATGACAAAAGGTTATGTTTTATG TTTAGTTTTTTGTGCGAGTAAATCTAGAAAATCTACAAGTACGAAGACAA GGACAAAACACCGATGCAATCGGTGGCCTAATAAGAAATGAAGAAAACGA GTTCATGAAACACGCGAAAGAAATCATACGCAGTAAACGAAAGTCTTTCT CTTATAAGAAAGGATAAGTGTATTTTTTTGGAAAGGCATCGAAGAAAGGC TATAGCCATGAGCATGAGAAGAATATCTAAGAAAGATGGCTTAGGTAATA TTGATAGGCCATATTATTGCAATTTCCCTACCACATAAGTTCACAAACGC AAGCAAAAGTAACACAAAGCAAACAAACAAACAAACGAGCAAACATGCAA GCATTCAAAAGCTGCATAGCACACAAACAATCGAAGAATCGATTCGTTCA GAGCGCATGCGTAGCAGATTTAGCATTAAGTACGATCTTCTAGAGGTAAG ATGCATTTTTTTTTTGTTAGTTGGGGGCCAGTCTCTACGGGGAGACTTTG CCCTGATACTCTAGATCGTAATTTTCGATTGTTTAATCCCCGAAGCTTAG AGATAATTGTACTCGTGTTTGTATTTGAATGCGGTTTATATTTATGACTA TATTTATATATCGATGTATACATGTATATCTAAAAACTTAAACGACTGAT TATATATTTTCCCCTGATTAGTTGTATACTTAACTCCTTTTTTGTAATAC CTATGCATTAACTATGCTAAGACCACTTTGGCACTTTGGCGACCGTTGAA ATGAAAACGGAGTGGATAACTTTCTGCGTTTTCCCCAAATCGCAAGCTAA TTTCAACTTCAAAGACTCAAAGCACAAGTTCATCTAGTTAAGTAAATGTA TTTGTAATTGTTGAATTGATGATTAAAGGATAGTTCTCCACTAATTGAGG AGGCACGTTTGATGTGGAGGAACTATGGAGATGAAAAAGGTGGAGCTTAG GGATCTTCGCTCGTTGCTAGTTGAAATTCGTGCAACAAGCGCAAAGTATT AAAATATTGATAAATACAATTTAAATGTGTAAATGTAATTGATCGAGCAT CCGAATATGAATCAATAAAAGAACATGAAATCAATGGAA
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) sdk-RB FBtr0070132 8904 sdk-RC FBtr0070131 8980 sdk-RD FBtr0070130 8956
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) sdk-PA FBpp0070128 2224
Derived from OTHER transcripts	Name FlyBase ID Length (aa) sdk-PB FBpp0070127 2224 sdk-PC FBpp0070126 2232 sdk-PD FBpp0070125 2224
Comments
	CDS edit: sequencing error
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_057941
Synonyms
	CG5227-RA sdk-RA sdk-RB sdk-RC
References ( 3 )
Research paper	Nguyen et al., 1997, Development 124(17): 3303--3312 The sidekick gene, a member of the immunoglobulin superfamily, is required for pattern formation in the Drosophila eye. [FBrf0098319]
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]