A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG40196

General Information
SymbolDmel\CG40196SpeciesD. melanogaster
NameCG40196Annotation symbolCG40196
Feature typeprotein_coding_geneFlyBase IDFBgn0058196
Created / Updated2007-03-02/2007-03-02
Genomic Location
Chromosome (arm)URecombination map
Cytogenetic mapSequence locationU:1,091,918..1,103,370 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG40196 (FBgn0058196). Its sequence location is U:1091918..1103370. Its molecular function is described as transcription regulator activity. It is involved in the biological process negative regulation of transcription from RNA polymerase III promoter. One allele is reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
h59-h61
 
(Drosophila Heterochromatin Genome Project, 2004)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG40196 for information on other features
detailed view FBtr0113831 FBtr0113830 FBtr0113829 FBpp0112554 FBpp0112553 FBpp0112552
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG40196-RA
FBtr0113829
 NM_001015167
  1180
  226
CG40196-RB
FBtr0113831
 NM_001015168
  1121
  226
CG40196-RC
FBtr0113830
 NM_001110544
  1282
  226
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG40196-PA  
FBpp0112552  
25.7  
226  
4.70  
  NP_001015167
  EAA46257
CG40196-PB  
FBpp0112554  
25.7  
226  
4.70  
  NP_001015168
  EAA46258
CG40196-PC  
FBpp0112553  
25.7  
226  
4.70  
  NP_001104014
  EDP27993
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
Maf1 regulator (IPR015257)
RNA polymerase III transcriptional repressor, MAF1 (IPR017152)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AABU01002543
EAA46257
 
AABU01002543
EAA46258
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 1 )
        For All Classical Alleles Show

        Allele of CG40196ClassMutagenStocksKnown lesion
        CG40196RR48331
          		0 Yes
          hide Alleles Carried on Transgenic Constructs ( 0 )
          For All Alleles Carried on Transgenic Constructs Show

          Allele of CG40196ClassMutagenStocksKnown lesion
          hide Aneuploid Aberrations
          hide Transgenic Constructs & Insertions
          Transgenic Constructs
          Type of construct
          Name
          Expression data
          Insertions
          Type of insertions
          Name
          Expression data
          miscellaneous insertions
          1731{}CG40196RR48331
          NA
          hide Related Comments
          Please look at the allele reports for the complete phenotype data
          hide Gene Ontology: Function, Process & Cellular Component ( 3 )
          hide Molecular Function
          CV term
          Evidence
          References
          transcription regulator activity
          inferred from electronic annotation with InterPro:IPR017152
          (FlyBase Curators et al., 2004-)
          hide Biological Process
          CV term
          Evidence
          References
          negative regulation of transcription from RNA polymerase III promoter
          inferred from electronic annotation with InterPro:IPR017152
          (FlyBase Curators et al., 2004-)
          hide Cellular Component
          CV term
          Evidence
          References
          nucleus
          inferred from electronic annotation with InterPro:IPR017152
          (FlyBase Curators et al., 2004-)
          hide Sequence Ontology: Class of Gene
          protein_coding_gene
           
          nuclear_gene
           
          hide Interactions & Pathways
          hide Summary of Genetic Interactions
          Interacts with
          Please look at the allele data for full details of the genetic interactions
          CG40196 allele
          Gene
          References
          hide External Data
          Linkouts
          BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
          •
          Drosophila PIMRider - The Drosophila Protein Interaction map
          •
          hide Orthologs
          Genome-wide drosophilid orthologs
          Curated drosophilid orthologs
          Linkouts
          InParanoid orthologs - Eukaryotic orthologs
          •
          hide Functional Complementation between Species
          hide Inter-Species Misexpression Data
          Produces phenotype in
          Produces NO phenotype in
          hide Stocks & Reagents
          hide Stocks Listed in FlyBase ( 0 )
          hide Genomic Clones ( 0 )
          hide cDNA Clones ( 0 )
          Please Note
          This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
          cDNA Clones, Fully Sequenced
          BDGP DGC clones
          Other clones
          cDNA Clones, End Sequenced (ESTs)
          BDGP DGC clones
          Other clones
          hide RNAi & Array Information
          Affy Oligo
          Linkouts
          hide Antibody Information
          hide Other Information
          hide Discoverer
          hide Etymology
          hide Identification
          hide Position Effect Variegation Data
          hide Relationship to Other Genes
          Source for database identity of
          Source for database merge of
          Additional comments
          hide Comments About Role
          hide Comments About Molecular Function
          hide Other Comments
          New annotation (CG40196) in release 3 of the genome annotation.
          (FlyBase Genome Annotators, 2002-2003)
          hide External Crossreferences & Linkouts
          Sequence Crossreferences
          RefSeq (Transcripts)
          •
          RefSeq (Proteins)
          •
          DDBJ / EMBL / GenBank
          •
          UniProtKB/TrEMBL
          •
          Other Crossreferences
          InterPro domains - A database of protein families, domains, and functional sites
          •
          Maf1 regulator (IPR015257)
          RNA polymerase III transcriptional repressor, MAF1 (IPR017152)
          Linkouts
          BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
          •
          Drosophila PIMRider - The Drosophila Protein Interaction map
          •
          FLIGHT - Cell culture data for RNAi and other high-throughput technologies
          •
          FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
          •
          FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
          •
          InParanoid orthologs - Eukaryotic orthologs
          •
          PANTHER - Protein classification by function, families, and pathways
          •
          hide Synonyms & Secondary IDs ( 1 )
          Reported As
          Symbol Synonym
          CG40196
          (Drosophila Heterochromatin Genome Project, 2007, Maisonhaute et al., 2007)
          Name Synonym
          CG40196
           
          Secondary FlyBase IDs
          • FBan0040196
          hide References ( 6 )
          Research paper
          Maisonhaute et al., 2007, Gene 393(1-2): 116--126
          Amplification of the 1731 LTR retrotransposon in Drosophila melanogaster cultured cells: origin of neocopies and impact on the genome. [FBrf0200843]
          Personal communication to FlyBase
          Drosophila Heterochromatin Genome Project, 2007, Release 5.2 of the annotated Drosophila melanogaster heterochromatin.
          Release 5.2 of the annotated Drosophila melanogaster heterochromatin. [FBrf0199188]
          Drosophila Heterochromatin Genome Project, 2004, Release 3.2 of the annotated Drosophila melanogaster heterochromatin.
          Release 3.2 of the annotated Drosophila melanogaster heterochromatin. [FBrf0173307]
          FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
          Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
          FlyBase analysis
          FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.
          Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
          FlyBase, 1992-, FlyBase curation
          FlyBase curation. [FBrf0105495]