Gene Dmel\CG31612

Help

Close All Open All

General Information

Symbol

Dmel\CG31612

Species

D. melanogaster

Name

CG31612

Annotation symbol

CG31612

Feature type

protein_coding_gene

FlyBase ID

FBgn0051612

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

40A2-40A3

Sequence location

2L:21,762,289..21,795,445 [-]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG31612 (FBgn0051612). It has the cytological map location 40A2-40A3. Its sequence location is 2L:21762289..21795445. Its molecular function is described as: nucleic acid binding; zinc ion binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

40A2-40A3

Limits computationally determined from genome sequence between P{lacW}Df31^k05815 and P{PZ}cul-2⁰²⁰⁷⁴&P{lacW}l(2)k08110^k08110

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG31612 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG31612-RA

FBtr0085908

NM_165400

3308

987

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG31612-PA

FBpp0085262

113.8

987

8.77

NP_724363

AAF57234

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0051612

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Zinc finger, C2H2-type (IPR007087)

Zinc finger, C2H2-like (IPR015880)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Maps to

Does NOT map to

Identified with

RE19601

(BDGP Project Members, 2000-)

IP01335

(Hoskins et al., 2005)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

11536

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0051612

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0051612

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0051612

FlyExpress - Embryonic expression images (BDGP data)

•

Show all FlyExpress processed images for CG31612

Stage(s) 9-10

Stage(s) 11-12

Stage(s) 13-16

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 3 )

For All Classical Alleles Show

Allele of CG31612	Mutagen	Stocks	Known lesion
CG31612^MB02703		1	--
CG31612^e00119	piggyBac transposase	1	--
CG31612^f07699	piggyBac transposase	1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG31612	Class	Mutagen	Stocks	Known lesion
CG31612^GD4324		in vitro construct \| RNAi in vitro construct \| regulatory fusion	2	Yes

Aneuploid Aberrations

Useful duplication

Dp(2;f)Bl

Disrupted in

Df(2L)Exel7082

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD4324}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}CG31612^e00119

PBac{WH}CG31612^f07699

P{wHy}CG31612^DG20402

insertion of enhancer trap binary system

Mi{ET1}CG31612^MB02703

insertion of enhancer trap

P{lacW}l(2)SH1810^SH1810

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 4 )

Molecular Function

CV term

Evidence

References

nucleic acid binding

inferred from sequence or structural similarity with InterPro:IPR007087

(FlyBase, 1992-)

zinc ion binding

inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR015880

(FlyBase Curators et al., 2004-)

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

lipid particle

inferred from direct assay

(Cermelli et al., 2006)

nucleus

inferred from sequence or structural similarity with InterPro:IPR007087

(FlyBase, 1992-)

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG31612 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

61371

Orthologs

Genome-wide drosophilid orthologs

Dana\GF23873

Dere\GG21478

Dgri\GH12884

Dmoj\GI24607

Dper\GL26125

Dpse\GA16336

Dsec\GM16127

Dsim\GD21628

Dvir\GJ16394

Dwil\GK18705

Dyak\GE12979

Curated drosophilid orthologs

Dpse\GA16336

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000019559
Anopheles gambiae (Ensembl)
ENSMODP00000015449
Monodelphis domestica (Ensembl)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 7 )

Harvard

PBac{RB}CG31612^e00119

PBac{WH}CG31612^f07699

VDRC

v30544

w¹¹¹⁸; P{GD4324}v30544

v30545

w¹¹¹⁸; P{GD4324}v30545

Szeged

P{lacW}l(2)SH1810^SH1810

Bloomington

24026

w¹¹¹⁸; Mi{ET1}CG31612^MB02703

21731

y¹ w^67c23; P{wHy}CG31612^DG20402/SM6a

Genomic Clones ( 2 )

cDNA Clones ( 8 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

SD22871

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0051612

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0051612

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: CG11631 CG11632 Annotations CG11631, CG11632 merged as CG31612 in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_165400

RefSeq (Proteins)

•

NP_724363

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Zinc finger, C2H2-type (IPR007087)

Zinc finger, C2H2-like (IPR015880)

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

61371

DEDB - Drosophila exon database: splicing graphs

•

11536

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0051612

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0051612

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0051612

FlyExpress - Embryonic expression images (BDGP data)

•

FBgn0051612

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0051612

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0051612

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0051612

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000019559
Anopheles gambiae (Ensembl)
ENSMODP00000015449
Monodelphis domestica (Ensembl)

PANTHER - Protein classification by function, families, and pathways

•

FBgn0051612

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

CG11631

CG11632

CG31612

(Hoskins et al., 2005, Cermelli et al., 2006)

Name Synonym

CG31612

Secondary FlyBase IDs

FBgn0032962
FBgn0032963

References ( 16 )

Research paper

Cermelli et al., 2006, Curr. Biol. 16(18): 1783--1795: The lipid-droplet proteome reveals that droplets are a protein-storage depot. [FBrf0192764]
Hoskins et al., 2005, Nucleic Acids Res. 33(21): e185: Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). [FBrf0191341]
Brody et al., 2002, Mech. Dev. 113(1): 41--59: Identification of novel Drosophila neural precursor genes using a differential embryonic head cDNA screen. [FBrf0147137]

Supplementary material

Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]
Oh et al., 2003, Genetics 163(1):: Table S1. [FBrf0157097]

Personal communication to FlyBase

Bellen, 2007.7.9, batch750.xml: batch750.xml [FBrf0199563]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

FlyBase analysis

FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
FlyBase, 1992-, FlyBase curation: FlyBase curation. [FBrf0105495]

Computer file

Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.: Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]

Automatic genome annotation

FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126705]

Curated genome annotation

Li, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126682]