A Database of Drosophila Genes & Genomes

FB2008_06, released July 3, 2008
 

Gene Dmel\mir-10

General Information
SymbolDmel\mir-10SpeciesD. melanogaster
Namemir-10Annotation symbolCR32942
Feature typemiRNA_geneFlyBase IDFBgn0046833
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map 84A5-84A5 Sequence location3R:2,635,276..2,635,296 [-]
Map ( GBrowse ) detailed view
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Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol mir-10 (CR32942, FBgn0046833). It has the cytological map location 84A5. Its sequence location is 3R:2635276..2635296. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript.
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
84A5-84A5  
Limits computationally determined from genome sequence between P{PZ}pb04498 and P{lacW}l(3)L2100L2100  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
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Please see the GBrowse view of Dmel\mir-10 for information on other features
detailed view
Comments on Gene Model
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
 
mir-10-RA
FBtr0081663
 NR_001987
  21
 
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
miRBase - the home of microRNA data
•
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
 
Name
AJ421770
 
 
Maps to
Does NOT map to
Identified with
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Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
FlyBase-Curated Data
Transcript data Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
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Stage
Tissue/Position
Reference
Marker for
    Subcellular Localization
    CV Term
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    Linkouts
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    •
    hide Alleles & Phenotypes
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    Phenotype manifest in
    Allele
    hide Classical Alleles ( 0 )
    For All Classical Alleles Show

    Allele of mir-10ClassMutagenStocksKnown lesion
    hide Alleles Carried on Transgenic Constructs ( 0 )
    For All Alleles Carried on Transgenic Constructs Show

    Allele of mir-10ClassMutagenStocksKnown lesion
    hide Aneuploid Aberrations
    Useful deficiency
     
    Useful duplication
     
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    Transgenic Constructs
    Type of construct
    Name
    Expression data
    Insertions
    Type of insertions
    Name
    Expression data
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    Please look at the allele reports for the complete phenotype data
    hide Gene Ontology: Function, Process & Cellular Component ( 0 )
    hide Molecular Function
    CV term
    Evidence
    References
    hide Biological Process
    CV term
    Evidence
    References
    hide Cellular Component
    CV term
    Evidence
    References
    hide Sequence Ontology: Class of Gene
    miRNA_gene
    (Lagos-Quintana et al., 2001)
    nuclear_gene
    (Lagos-Quintana et al., 2001)
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    hide Summary of Genetic Interactions
    Interacts with
    Please look at the allele data for full details of the genetic interactions
    mir-10 allele
    Gene
    References
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    Linkouts
    BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
    •
    hide Orthologs
    Genome-wide drosophilid orthologs
    Curated drosophilid orthologs
     
    Linkouts
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    hide Inter-Species Misexpression Data
    Produces phenotype in
    Produces NO phenotype in
    hide Stocks & Reagents
    hide Stocks Listed in FlyBase ( 0 )
    hide Genomic Clones ( 1 )
    hide cDNA Clones ( 0 )
    cDNA Clones, Fully Sequenced
    BDGP DGC clones
    Other clones
    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
    Other clones
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    Affy Oligo
    Linkouts
    GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
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    hide Position Effect Variegation Data
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    Source for database identity of
    Source for database merge of
    Additional comments
    hide Comments About Role
    hide Comments About Molecular Function
    hide Other Comments
    New annotation (CR32942) in release 3 of the genome annotation.
    (FlyBase Genome Annotators, 2002-2003)
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    Sequence Crossreferences
    RefSeq (Transcripts)
    •
    DDBJ / EMBL / GenBank
    •
    Other Crossreferences
    miRBase - the home of microRNA data
    •
    Linkouts
    BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
    •
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    •
    FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
    •
    GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
    •
    hide Synonyms & Secondary IDs ( 4 )
    Reported As
    Symbol Synonym
    CR32942
     
    miR-10
    (Leaman, 2005, Kosman et al., 2004, Sokol and Ambros, 2005, Lemons and McGinnis, 2005, Nakahara and Carthew, 2004, Lai et al., 2003, Schwarz et al., 2003, Sempere et al., 2003, Lee et al., 2001, Lagos-Quintana et al., 2001, Stark et al., 2003, Stark et al., 2003, Stark et al., 2005, Lemons and McGinnis, 2006, Behura, 2007, Paré et al., 2008, Lemons and McGinnis, 2008, Stark et al., 2007)
    mir-10
    (Pearson et al., 2005)
    miR-10a
    (Orom et al., 2006)
    Name Synonym
    mir-10
     
    Secondary FlyBase IDs
      hide References ( 25 )
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      hide Recent research papers ( 2 )
      Stark et al., 2007, Nature 450(7167): 219--232
      Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [FBrf0200674]
      Orom et al., 2006, Gene 372: 137--141
      LNA-modified oligonucleotides mediate specific inhibition of microRNA function. [FBrf0190503]
      Show all research papers ...
      hide Recent reviews ( 2 )
      Behura, 2007, Insect Biochem. Molec. Biol. 37(1): 3--9
      Insect microRNAs: Structure, function and evolution. [FBrf0194885]
      Lemons and McGinnis, 2006, Science 313(5795): 1918--1922
      Genomic evolution of Hox gene clusters. [FBrf0200009]
      Show all reviews ...