Gene Dmel\CG17230

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General Information

Symbol

Dmel\CG17230

Species

D. melanogaster

Name

CG17230

Annotation symbol

CG17230

Feature type

protein_coding_gene

FlyBase ID

FBgn0046225

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

86E5-86E6

Sequence location

3R:7,263,507..7,291,573 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG17230 (FBgn0046225). It has the cytological map location 86E5-86E6. Its sequence location is 3R:7263507..7291573. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

86E5-86E6

Limits computationally determined from genome sequence between P{EP}EP3340^EP3340 and P{PZ}tho¹&P{PZ}l(3)04629⁰⁵²⁷⁵

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG17230 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG17230-RA

FBtr0082392

NM_141820

2140

501

CG17230-RB

FBtr0082393

NM_169394

1949

501

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG17230-PA

FBpp0081868

59.2

501

6.40

NP_650077

AAF54644

CG17230-PB

FBpp0081869

59.2

501

6.40

NP_731578

AAF54645

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q7K4X4

Maps to

Does NOT map to

Identified with

GH24095

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

9024

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Microarray Data

Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)

Untitled Document detailed view

AI404405

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0046225

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0046225

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 3 )

For All Classical Alleles Show

Allele of CG17230	Mutagen	Stocks	Known lesion
CG17230^f05072	piggyBac transposase	1	--
CG17230^f07849		1	--
CG17230^tho-1		1	Yes

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG17230	Class	Mutagen	Stocks	Known lesion
CG17230^GD9318		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Useful deficiency

Df(3R)M-Kx1

Useful duplication

Dp(3;3)M86D⁺2

Disrupted in

Df(3R)Exel6160

(Ryder, 2004.4.26)

Df(3R)Exel8153

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD9318}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{WH}CG17230^f05072

PBac{WH}CG31374^f07849

insertion of enhancer trap

P{PZ}tho¹

Yes

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 0 )

Molecular Function

CV term

Evidence

References

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG17230 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

66509

Orthologs

Genome-wide drosophilid orthologs

Dana\GF18372

Dere\GG18178

Dgri\GH17325

Dmoj\GI10288

Dper\GL12376

Dpse\GA14404

Dsec\GM23947

Dvir\GJ11096

Dwil\GK11298

Dyak\GE26099

Curated drosophilid orthologs

Dpse\GA14404

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000013903
Anopheles gambiae (Ensembl)
ENSCAFP00000015848
Canis familiaris (Ensembl)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 6 )

Harvard

PBac{WH}CG17230^f05072

PBac{WH}CG31374^f07849

VDRC

v20409

w¹¹¹⁸; P{GD9318}v20409

Kyoto

101728

P{PZ}tho¹ ry⁵⁰⁶ / MKRS

Bloomington

11788

P{PZ}tho¹ CG17230^tho-1 ry⁵⁰⁶/MKRS

19113

w¹¹¹⁸; PBac{WH}CG31374^f07849 CG17230^f07849/TM6B, Tb¹

Genomic Clones ( 2 )

cDNA Clones ( 47 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

AT13971
AT20022
AT13034
AT25210
AT27572
AT19413
AT19795
AT01529
AT13182
AT01873
AT27755
AT09736
AT31216
AT11352
LD43345
AT04014
AT09384
AT30573
AT15545
AT27558
AT23507
AT12289
LP17788
AT02357
AT10227
AT23245
AT29972
GH10709
AT01620
AT22506
AT27118
AT18765
AT25516
AT17470
AT25771
AT08463
AT19906
AT11560
AT16288
AT26690

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0046225

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0046225

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: BcDNA:GH24095 CG17230 Source for merge of: CG17230 CG5286 Source for merge of BcDNA:GH24095 CG17230 was a shared cDNA (GH24095) (date:011030). Source for merge of CG17230 CG5286 was sequence comparison (date:001104).

(FlyBase, 1996-)

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q7K4X4

Other Crossreferences

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

66509

DEDB - Drosophila exon database: splicing graphs

•

9024

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0046225

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0046225

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0046225

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0046225

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0046225

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000013903
Anopheles gambiae (Ensembl)
ENSCAFP00000015848
Canis familiaris (Ensembl)

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

BcDNA:GH24095

(Ringrose et al., 2003, Giot et al., 2003, )

CG5286

CG17230

Name Synonym

CG17230

Secondary FlyBase IDs

FBgn0037903
FBgn0037907

References ( 10 )

Research paper

Ringrose et al., 2003, Dev. Cell 5(5): 759--771: Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster. [FBrf0167478]

Supplementary material

Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

FlyBase analysis

FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]
FlyBase, 1992-, FlyBase curation: FlyBase curation. [FBrf0105495]

Computer file

Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.: Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]

Automatic genome annotation

FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126705]