A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG12084

General Information
SymbolDmel\CG12084SpeciesD. melanogaster
NameCG12084Annotation symbolCG12084
Feature typeprotein_coding_geneFlyBase IDFBgn0043458
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map62A2-62A2Sequence location3L:1,491,370..1,496,667 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG12084 (FBgn0043458). It has the cytological map location 62A2. Its sequence location is 3L:1491370..1496667. Its molecular function is described as binding. The biological processes in which it is involved are not known. 4 alleles are reported. The phenotypes of these alleles are annotated with: dorsocentral bristle; scutellar bristle; trichogen cell; thecogen cell; tormogen cell; eye. It has one annotated transcript and one annotated polypeptide.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
62A2-62A2  
Limits computationally determined from genome sequence between P{EP}rhoEP3704&P{PZ}l(3)0622606226 and P{PZ}dlt04276  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
62A1-62A2
(determined by in situ hybridisation)  
(Abdelilah-Seyfried et al., 2000)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG12084 for information on other features
detailed view FBtr0072712 FBtr0072711 FBtr0072710 FBtr0072709 FBtr0072707 FBtr0072708 FBpp0072595 FBpp0072591 FBpp0072594 FBpp0072592 FBpp0072593 FBti0039332 FBti0075483 FBti0011757 FBti0018821
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG12084-RA
FBtr0072711
 NM_138268
  3172
  793
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG12084-PA  
FBpp0072595  
90.4  
793  
6.76  
  NP_612112
  AAF47500
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
Armadillo-like helical (IPR011989)
Armadillo-type fold (IPR016024)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AA246474
 
AA390262
 
AA696843
 
AA816564
 
AA820171
 
AE003471
AAF47500
 
AI293778
 
AI389200
 
AI403750
 
AI517284
 
AQ073108
 
AW941492
 
AY128434
AAM75027
 
BF494033
 
BF497465
 
BF497603
 
BG637414
 
BG638374
 
BI214072
 
BI363510
 
BI485038
 
BI637589
 
CK657264
 
CK658057
 
CO265969
 
CO290931
 
CO323135
 
CO338999
 
EC060069
 
EC072671
 
EC235885
 
EC242492
 
LD23645
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (BDGP Project Members, 2000-, Abdelilah-Seyfried et al., 2000)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Other Phenotypes
        Allele
        visible, with Scer\GAL4sca-537.4
        visible, with Scer\GAL4ey.PH
        Phenotype manifest in
        Allele
        dorsocentral bristle, with Scer\GAL4sca-537.4
        scutellar bristle, with Scer\GAL4sca-537.4
        trichogen cell, with Scer\GAL4sca-537.4
        thecogen cell, with Scer\GAL4sca-537.4
        tormogen cell, with Scer\GAL4sca-537.4
        eye, with Scer\GAL4ey.PH
        hide Classical Alleles ( 3 )
        For All Classical Alleles Show

        Allele of CG12084ClassMutagenStocksKnown lesion
        CG12084EP36732 Yes
        CG12084KG028791 --
        CG12084MB01742
          		1 --
          hide Alleles Carried on Transgenic Constructs ( 1 )
          For All Alleles Carried on Transgenic Constructs Show

          Allele of CG12084ClassMutagenStocksKnown lesion
          CG12084GD74742 Yes
          hide Aneuploid Aberrations
          Useful deficiency
           
          Disrupted in
          (Ryder, 2004.4.26)
          hide Transgenic Constructs & Insertions
          Transgenic Constructs
          Type of construct
          Name
          Expression data
          UAS construct
          P{GD7474}
          NA
          Insertions
          Type of insertions
          Name
          Expression data
          miscellaneous insertions
          P{SUPor-P}CG12084KG02879
          NA
          insertion of enhancer trap binary system
          Mi{ET1}CG12084MB01742
          No
          insertion of mobile activating element
          P{EP}CG12084EP3673
          NA
          hide Related Comments
          Please look at the allele reports for the complete phenotype data
          hide Gene Ontology: Function, Process & Cellular Component ( 1 )
          hide Molecular Function
          CV term
          Evidence
          References
          binding
          inferred from electronic annotation with InterPro:IPR011989, InterPro:IPR016024
          (FlyBase Curators et al., 2004-)
          hide Biological Process
          CV term
          Evidence
          References
          hide Cellular Component
          CV term
          Evidence
          References
          hide Sequence Ontology: Class of Gene
          protein_coding_gene
           
          nuclear_gene
           
          hide Interactions & Pathways
          hide Summary of Genetic Interactions
          Interacts with
          Please look at the allele data for full details of the genetic interactions
          CG12084 allele
          Gene
          References
          CG12084EP3673
          N
          (Abdelilah-Seyfried et al., 2000)
          pnr
          (Pena-Rangel et al., 2002)
          H
          (Abdelilah-Seyfried et al., 2000)
          CycE
          (Tseng and Hariharan, 2002)
          hide External Data
          Linkouts
          BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
          •
          hide Orthologs
          Genome-wide drosophilid orthologs
          Curated drosophilid orthologs
           
          Linkouts
          InParanoid orthologs - Eukaryotic orthologs
          •
          hide Functional Complementation between Species
          hide Inter-Species Misexpression Data
          Produces phenotype in
          Produces NO phenotype in
          hide Stocks & Reagents
          hide Stocks Listed in FlyBase ( 6 )
          Kyoto
          109017
          P{EP}CG12084EP3673
          Szeged
          -
          P{EP}CG12084EP3673
          VDRC
          v31646
          w1118; P{GD7474}v31646
          v31647
          w1118; P{GD7474}v31647/TM3
          Bloomington
          23756
          y1 w67c23; Mi{ET1}CG12084MB01742
          12996
          y1 w67c23; P{SUPor-P}CG12084KG02879 ry506
          hide Genomic Clones ( 1 )
          hide cDNA Clones ( 23 )
          Please Note
          This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
          cDNA Clones, Fully Sequenced
          BDGP DGC clones
          Other clones
          cDNA Clones, End Sequenced (ESTs)
          BDGP DGC clones
          Other clones
          hide RNAi & Array Information
          Affy Oligo
          Linkouts
          DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
          •
          GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
          •
          hide Antibody Information
          hide Other Information
          hide Discoverer
          hide Etymology
          hide Identification
          hide Position Effect Variegation Data
          hide Relationship to Other Genes
          Source for database identity of
          Source for database merge of
          Additional comments
          hide Comments About Role
          hide Comments About Molecular Function
          hide Other Comments
          hide External Crossreferences & Linkouts
          Sequence Crossreferences
          RefSeq (Transcripts)
          •
          RefSeq (Proteins)
          •
          DDBJ / EMBL / GenBank
          •
          UniProtKB/TrEMBL
          •
          Other Crossreferences
          InterPro domains - A database of protein families, domains, and functional sites
          •
          Armadillo-like helical (IPR011989)
          Armadillo-type fold (IPR016024)
          Linkouts
          BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
          •
          DEDB - Drosophila exon database: splicing graphs
          •
          DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
          •
          FLIGHT - Cell culture data for RNAi and other high-throughput technologies
          •
          FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
          •
          GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
          •
          GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
          •
          InParanoid orthologs - Eukaryotic orthologs
          •
          hide Synonyms & Secondary IDs ( 3 )
          Reported As
          Symbol Synonym
          BEST:LD02105
          (Abdelilah-Seyfried et al., 2000, Giot et al., 2003, )
          CG12084
           
          LD02105
          (Pena-Rangel et al., 2002)
          Name Synonym
          CG12084
           
          Secondary FlyBase IDs
          • FBgn0035224
          hide References ( 14 )
          Research paper
          Pena-Rangel et al., 2002, Genetics 160(3): 1035--1050
          A misexpression study examining dorsal thorax formation in Drosophila melanogaster. [FBrf0147055]
          Tseng and Hariharan, 2002, Genetics 162(1): 229--243
          An overexpression screen in Drosophila for genes that restrict growth or cell-cycle progression in the developing eye. [FBrf0152035]
          Abdelilah-Seyfried et al., 2000, Genetics 155(2): 733--752
          A gain-of-function screen for genes that affect the development of the Drosophila adult external sensory organ. [FBrf0128367]
          Supplementary material
          Giot et al., 2003, Science 302(5651):
          Tables S1 to S7. [FBrf0166452]
          Personal communication to FlyBase
          BDGP TI submission, 2007.5.25, MB714.xml
          MB714.xml [FBrf0200402]
          Bellen, 2007.4.5, batch731.xml
          batch731.xml [FBrf0191801]
          Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
          RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
          FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
          Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
          Ryder, 2004.4.26, Exelixis CG deletion data.
          Exelixis CG deletion data. [FBrf0184335]
          FlyBase analysis
          FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
          FlyBase inference based on genome sequence analysis. [FBrf0104946]
          FlyBase, 1992-, FlyBase curation
          FlyBase curation. [FBrf0105495]
          Computer file
          Gene Disruption Project members, 2001-, [title not yet available]
          [title not yet available] [FBrf0132177]
          BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
          Berkeley Drosophila Genome Project. [FBrf0125078]
          Automatic genome annotation
          FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]
          [Annotations performed at the Celera Jamboreee.] [FBrf0126705]