Gene Dmel\CG15107

Help

Close All Open All

General Information

Symbol

Dmel\CG15107

Species

D. melanogaster

Name

CG15107

Annotation symbol

CG15107

Feature type

protein_coding_gene

FlyBase ID

FBgn0041702

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

56A2-56A2

Sequence location

2R:14,858,814..14,859,943 [-]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG15107 (FBgn0041702). It has the cytological map location 56A2. Its sequence location is 2R:14858814..14859943. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

56A2-56A2

Limits computationally determined from genome sequence between P{lacW}prod^k08810 and P{PZ}ena⁰²⁰²⁹&P{lacW}cora^k08713

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG15107 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG15107-RA

FBtr0086600

NM_145192

1007

239

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG15107-PA

FBpp0085784

28.1

239

4.58

NP_660193

AAF57615

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q7JW01

Maps to

Does NOT map to

Identified with

LD14312

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

11896

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0041702

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0041702

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0041702

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable

CG15107^f05153

Sterility

Allele

fertile

CG15107^f05153

Phenotype manifest in

Allele

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of CG15107	Class	Mutagen	Stocks	Known lesion
CG15107^e04696		piggyBac transposase	1	--
CG15107^f05153		piggyBac transposase	2	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG15107	Class	Mutagen	Stocks	Known lesion
CG15107^GD8909		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Useful duplication

Dp(2;Y)53D;57C

Disrupted in

Df(2R)Exel6068

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD8909}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}CG15107^e04696

PBac{WH}CG15107^f05153

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 0 )

Molecular Function

CV term

Evidence

References

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG15107 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

72810

Orthologs

Genome-wide drosophilid orthologs

Dana\GF13735

Dere\GG20930

Dper\GL10574

Dpse\GA24412

Dsec\GM19857

Dsim\GD25344

Dyak\GE13866

Curated drosophilid orthologs

Dpse\GA13497

Linkouts

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 4 )

Harvard

PBac{RB}CG15107^e04696

PBac{WH}CG15107^f05153

VDRC

v19293

w¹¹¹⁸; P{GD8909}v19293/TM3

Bloomington

18841

w¹¹¹⁸; PBac{WH}CG15107^f05153

Genomic Clones ( 1 )

BACR08I18

cDNA Clones ( 2 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

LD14312

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

EK047434

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0041702

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0041702

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_145192

RefSeq (Proteins)

•

NP_660193

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q7JW01

Other Crossreferences

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

72810

DEDB - Drosophila exon database: splicing graphs

•

11896

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0041702

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0041702

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0041702

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0041702

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0041702

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0041702

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG15107

(Mack et al., 2006, Riedl et al., 2007)

Name Synonym

CG15107

Secondary FlyBase IDs

References ( 13 )

Research paper

Riedl et al., 2007, Fly 1(1): 23--32: Genetic and behavioral analysis of natural variation in Drosophila melanogaster pupation position. [FBrf0200063]
Mack et al., 2006, Proc. Natl. Acad. Sci. USA 103(27): 10358--10363: Mating-responsive genes in reproductive tissues of female Drosophila melanogaster. [FBrf0194111]
Ringrose et al., 2004, Molec. Cell 16(4): 641--653: Distinct contributions of histone h3 lysine 9 and 27 methylation to locus-specific stability of polycomb complexes. [FBrf0180527]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.: Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]
Whitfield, 2000.5.15, FlyBase error report for CG18608 on Mon May 15 03:05:37 2000.: FlyBase error report for CG18608 on Mon May 15 03:05:37 2000. [FBrf0129073]

FlyBase analysis

FlyBase, 1992-, FlyBase curation: FlyBase curation. [FBrf0105495]

Computer file

Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.: Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]

Automatic genome annotation

FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126705]

Curated genome annotation

Li, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126682]