A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG3038

General Information
SymbolDmel\CG3038SpeciesD. melanogaster
NameCG3038Annotation symbolCG3038
Feature typeprotein_coding_geneFlyBase IDFBgn0040373
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)XRecombination map
Cytogenetic map1A1-1A1Sequence locationX:138,083..139,875 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG3038 (FBgn0040373). It has the cytological map location 1A1. Its sequence location is X:138083..139875. Its molecular function is described as: UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity; transferase activity, transferring glycosyl groups. It is involved in the biological process protein amino acid glycosylation. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
1A1-1A1  
Limits computationally determined from genome sequence between P{EP}CG17896EP1320&P{EP}EP1398 and P{EP}svrEP356&P{EP}argEP452  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: CG3038- CG2995+ cin+ CG13377- ewg- CG13375- CG12470+
(Benos, 1999.12.13)
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG3038 for information on other features
detailed view FBtr0070108 FBtr0070107 FBtr0070063 FBpp0070103 FBpp0070102 FBpp0070062 FBti0047634 FBti0035733 FBti0021461 FBti0029708 FBti0029756 FBti0059103 FBti0029732 FBti0059075 FBti0029733 FBti0029712 FBti0059094 FBti0059186 FBti0059116 FBti0059044 FBti0058854 FBti0059077 FBti0059095 FBti0058853 FBti0059047 FBti0059112 FBti0058856 FBti0059033 FBti0058993 FBti0059204 FBti0058998 FBti0058832 FBti0058841 FBti0058843 FBti0058831 FBti0058836 FBti0059027 FBti0059135 FBti0071854
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG3038-RA
FBtr0070108
 NM_130477
  1719
  388
CG3038-RB
FBtr0070107
 NM_166834
  1627
  358
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG3038-PA  
FBpp0070103  
44.8  
388  
9.35  
  NP_569833
  AAF45486
CG3038-PB  
FBpp0070102  
41.3  
358  
8.82  
  NP_726658
  AAN09009
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
Glycosyl transferase, family 31 (IPR002659)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AA141303
 
AA141304
 
AA536272
 
AE003417
AAF45486
 
AE003417
AAN09009
 
AL050231
CAB65849
 
AW942429
 
AY061226
AAL28774
 
AY312642
AAQ67456
 
AY312643
AAQ67457
 
AY312644
AAQ67458
 
AY312645
AAQ67459
 
AY312646
AAQ67460
 
AY312647
AAQ67461
 
AY312648
AAQ67462
 
AY312649
AAQ67463
 
AY312650
AAQ67464
 
AY312651
AAQ67465
 
AY312652
AAQ67466
 
AY312653
AAQ67467
 
AY312654
AAQ67468
 
AY312655
AAQ67469
 
AY312656
AAQ67470
 
AY312657
AAQ67471
 
AY312658
AAQ67472
 
AY312659
AAQ67473
 
AY312660
AAQ67474
 
AY312661
AAQ67475
 
AY312662
AAQ67476
 
AY312663
AAQ67477
 
AY312664
AAQ67478
 
AY312665
AAQ67479
 
BI163209
 
BI165798
 
BI168635
 
BI238936
 
BI356282
 
BI367802
 
BI484135
 
BI486111
 
BI487058
 
BP547641
 
CK01556
 
CO270544
 
CO278287
 
CO288239
 
CO299993
 
CO324999
 
CO325915
 
CZ480156
 
EC063415
 
EC203587
 
EC226572
 
EC230586
 
EC241075
 
EC244451
 
EC254348
 
EC254530
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (Benos et al., 2001)
    (BDGP Project Members, 2000-)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 1 )
        For All Classical Alleles Show

        Allele of CG3038ClassMutagenStocksKnown lesion
        CG3038e023311 --
        hide Alleles Carried on Transgenic Constructs ( 1 )
        For All Alleles Carried on Transgenic Constructs Show

        Allele of CG3038ClassMutagenStocksKnown lesion
        CG3038GD127432 Yes
        hide Aneuploid Aberrations
        hide Transgenic Constructs & Insertions
        Transgenic Constructs
        Type of construct
        Name
        Expression data
        UAS construct
        P{GD12743}
        NA
        Insertions
        Type of insertions
        Name
        Expression data
        miscellaneous insertions
        PBac{RB}CG3038e02331
        NA
        hide Related Comments
        Please look at the allele reports for the complete phenotype data
        hide Gene Ontology: Function, Process & Cellular Component ( 4 )
        hide Molecular Function
        CV term
        Evidence
        References
        UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity
        inferred from sequence or structural similarity with EMBL:AF029790
        (FlyBase, 1992-)
        transferase activity, transferring glycosyl groups
        inferred from sequence or structural similarity with EMBL:Y15062
        (Schwientek et al., 2002)
        hide Biological Process
        CV term
        Evidence
        References
        protein amino acid glycosylation
        inferred from electronic annotation with InterPro:IPR002659
        (FlyBase Curators et al., 2004-)
        hide Cellular Component
        CV term
        Evidence
        References
        membrane
        inferred from electronic annotation with InterPro:IPR002659
        (FlyBase Curators et al., 2004-)
        hide Sequence Ontology: Class of Gene
        protein_coding_gene
         
        nuclear_gene
         
        hide Interactions & Pathways
        hide Summary of Genetic Interactions
        Interacts with
        Please look at the allele data for full details of the genetic interactions
        CG3038 allele
        Gene
        References
        hide External Data
        Linkouts
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        hide Orthologs
        Genome-wide drosophilid orthologs
        Curated drosophilid orthologs
         
         
        Linkouts
        InParanoid orthologs - Eukaryotic orthologs
        •
        hide Functional Complementation between Species
        hide Inter-Species Misexpression Data
        Produces phenotype in
        Produces NO phenotype in
        hide Stocks & Reagents
        hide Stocks Listed in FlyBase ( 3 )
        Harvard
        -
        PBac{RB}CG3038e02331
        VDRC
        v35573
        w1118; P{GD12743}v35573
        v35572
        w1118; P{GD12743}v35572/TM3
        hide Genomic Clones ( 1 )
        hide cDNA Clones ( 17 )
        Please Note
        This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
        cDNA Clones, Fully Sequenced
        BDGP DGC clones
        Other clones
        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
        Other clones
        hide RNAi & Array Information
        Affy Oligo
        Linkouts
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        hide Antibody Information
        hide Other Information
        hide Discoverer
        hide Etymology
        hide Identification
        hide Position Effect Variegation Data
        hide Relationship to Other Genes
        Source for database identity of
        Source for database merge of
        Source for merge of: EG:BACR37P7.1 CG3038 Source for merge of EG:BACR37P7.1 CG3038 was sequence comparison (date:000425).
        (FlyBase, 1996-)
        Additional comments
        hide Comments About Role
        hide Comments About Molecular Function
        hide Other Comments
        hide External Crossreferences & Linkouts
        Sequence Crossreferences
        RefSeq (Transcripts)
        •
        RefSeq (Proteins)
        •
        DDBJ / EMBL / GenBank
        •
        UniProtKB/TrEMBL
        •
        Other Crossreferences
        InterPro domains - A database of protein families, domains, and functional sites
        •
        Glycosyl transferase, family 31 (IPR002659)
        Linkouts
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        DEDB - Drosophila exon database: splicing graphs
        •
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        InParanoid orthologs - Eukaryotic orthologs
        •
        PANTHER - Protein classification by function, families, and pathways
        •
        hide Synonyms & Secondary IDs ( 2 )
        Reported As
        Symbol Synonym
        CG3038
         
        EG:BACR37P7.1
        (Benos, 1999.12.13, Benos et al., 2001, )
        Name Synonym
        CG3038
         
        Secondary FlyBase IDs
        • FBgn0029515
        hide References ( 16 )
        Research paper
        Page et al., 2005, EMBO J. 24(24): 4304--4315
        Spotted-dick, a zinc-finger protein of Drosophila required for expression of Orc4 and S phase. [FBrf0190363]
        Asha et al., 2003, Genetics 163(1): 203--215
        Analysis of ras-induced overproliferation in Drosophila hemocytes. [FBrf0155813]
        Sheldahl et al., 2003, Genetics 165(3): 1195--1208
        Recombination, dominance and selection on amino acid polymorphism in the Drosophila genome: contrasting patterns on the X and fourth chromosomes. [FBrf0167626]
        Schwientek et al., 2002, J. Biol. Chem. 277(36): 32421--32429
        The Drosophila gene brainiac encodes a glycosyltransferase putatively involved in glycosphingolipid synthesis. [FBrf0152092]
        Benos et al., 2001, Genome Res. 11(5): 710--730
        From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]
        Personal communication to FlyBase
        Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
        RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
        FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
        Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
        Benos, 2000.12.13, FlyBase error report on Wed Dec 13 14:35:56 2000.
        FlyBase error report on Wed Dec 13 14:35:56 2000. [FBrf0133222]
        FlyBase analysis
        FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
        FlyBase inference based on genome sequence analysis. [FBrf0104946]
        FlyBase, 1992-, FlyBase curation
        FlyBase curation. [FBrf0105495]
        DNA/RNA sequence record
        Benos, 1999.12.13, GenBank/EMBL/DDBJ: AL050231
        Drosophila melanogaster BAC clone BACR37P7. [FBrf0141114]
        Computer file
        Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
        Genomic mapping of Exelixis insertion collection. [FBrf0184340]
        Gene Disruption Project members, 2001-, [title not yet available]
        [title not yet available] [FBrf0132177]
        BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
        Berkeley Drosophila Genome Project. [FBrf0125078]
        Curated genome annotation
        Ashburner, 1999.11, [Annotations performed at the Celera Jamboreee.]
        [Annotations performed at the Celera Jamboreee.] [FBrf0126651]
        Automatic genome annotation
        FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]
        [Annotations performed at the Celera Jamboreee.] [FBrf0126705]