Gene Dmel\CG2310

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General Information

Symbol

Dmel\CG2310

Species

D. melanogaster

Name

CG2310

Annotation symbol

CG2310

Feature type

protein_coding_gene

FlyBase ID

FBgn0039665

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

99B1-99B1

Sequence location

3R:25,317,246..25,319,235 [-]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG2310 (FBgn0039665). It has the cytological map location 99B1. Its sequence location is 3R:25317246..25319235. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

99B1-99B1

Limits computationally determined from genome sequence between P{PZ}l(3)06743⁰⁶⁷⁴³ and P{PZ}ncd⁰⁵⁸⁸⁴

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG2310 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG2310-RA

FBtr0085433

NM_143437

1078

251

CG2310-RB

FBtr0085434

NM_170411

1257

251

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG2310-PA

FBpp0084799

28.0

251

8.46

NP_651694

AAF56895

CG2310-PB

FBpp0084800

28.0

251

8.46

NP_733290

AAF56897

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q7JZY1

Maps to

Does NOT map to

Identified with

RE06389

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

11225

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Microarray Data

Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)

Untitled Document detailed view

AI512091

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0039665

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0039665

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0039665

BDGP expression data

•

Show all BDGP original images, annotations and embryonic microarray data for CG2310

FlyExpress - Embryonic expression images (BDGP data)

•

Show all FlyExpress processed images for CG2310

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 3 )

For All Classical Alleles Show

Allele of CG2310	Mutagen	Stocks	Known lesion
CG2310^EY22202	P-element activity	1	--
CG2310^d06279	P-element activity	1	--
CG2310^f01882	piggyBac transposase	1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG2310	Class	Mutagen	Stocks	Known lesion
CG2310^GD357		in vitro construct \| RNAi in vitro construct \| regulatory fusion	2	Yes

Aneuploid Aberrations

Useful deficiency

Df(3R)01215

Useful duplication

Dp(3;3)501

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD357}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{WH}CG2310^f01882

P{SUPor-P}KG03064

insertion of mobile activating element

P{EPgy2}CG2310^EY22202

P{XP}CG2310^d06279

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 0 )

Molecular Function

CV term

Evidence

References

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG2310 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

68338

Orthologs

Genome-wide drosophilid orthologs

Dana\GF22887

Dere\GG12016

Dgri\GH18697

Dmoj\GI24464

Dper\GL13589

Dpse\GA15346

Dsec\GM12241

Dsim\GD17764

Dvir\GJ10557

Dwil\GK11182

Dyak\GE10452

Curated drosophilid orthologs

Dpse\GA15346

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000012265
Anopheles gambiae (Ensembl)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 6 )

Harvard

P{XP}CG2310^d06279

PBac{WH}CG2310^f01882

v1337

v1338

22543

y¹ w^67c23; P{EPgy2}CG2310^EY22202

13570

y¹ w^67c23; ry⁵⁰⁶ P{SUPor-P}KG03064

Genomic Clones ( 1 )

BACR48O23

cDNA Clones ( 27 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

RE06389

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0039665

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0039665

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q7JZY1

Other Crossreferences

Linkouts

BDGP expression data

•

Show all BDGP original images, annotations and embryonic microarray data for CG2310

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

68338

DEDB - Drosophila exon database: splicing graphs

•

11225

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0039665

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0039665

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0039665

FlyExpress - Embryonic expression images (BDGP data)

•

FBgn0039665

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0039665

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0039665

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0039665

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000012265
Anopheles gambiae (Ensembl)

University of Chicago Dev. Expression

•

FBgn0039665

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG2310

Name Synonym

CG2310

Secondary FlyBase IDs

References ( 7 )

Research paper

Kearney et al., 2004, Dev. Biol. 275(2): 473--492: Gene expression profiling of the developing Drosophila CNS midline cells. [FBrf0180108]
Freeman et al., 2003, Neuron 38(4): 567--580: Unwrapping glial biology: gcm target genes regulating glial development, diversification, and function. [FBrf0160527]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Bellen, 2006.8.3, MBBatch686_2.xml: MBBatch686_2.xml [FBrf0191805]

Computer file

Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.: Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]