Gene Dmel\CG1234

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General Information

Symbol

Dmel\CG1234

Species

D. melanogaster

Name

CG1234

Annotation symbol

CG1234

Feature type

protein_coding_gene

FlyBase ID

FBgn0037489

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

84D3-84D3

Sequence location

3R:3,069,896..3,072,689 [-]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG1234 (FBgn0037489). It has the cytological map location 84D3. Its sequence location is 3R:3069896..3072689. Its molecular function is described as binding. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

84D3-84D3

Limits computationally determined from genome sequence between P{EP}EP3060^EP3060 and P{PZ}grn⁰⁵⁹³⁰

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG1234 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG1234-RA

FBtr0081599

NM_141453

2628

822

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG1234-PA

FBpp0081117

94.5

822

9.45

NP_649710

AAF54043

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0037489

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

CBF (IPR005612)

Nucleolar complex-associated (IPR011501)

Armadillo-type fold (IPR016024)

Nucleolar complex-associated protein 3 (IPR016903)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VI82

Maps to

Does NOT map to

Identified with

LD35257

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

8457

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0037489

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0037489

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0037489

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of CG1234	Class	Mutagen	Stocks	Known lesion
CG1234^e01488		piggyBac transposase	2	--
CG1234^f00646		piggyBac transposase	1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG1234	Class	Mutagen	Stocks	Known lesion
CG1234^GD7574		in vitro construct \| RNAi in vitro construct \| regulatory fusion	2	Yes

Aneuploid Aberrations

Useful deficiency

Df(3R)rn17

Useful duplication

Dp(3;3)D1

Disrupted in

Df(3R)Exel6146

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD7574}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}CG1234^e01488

PBac{WH}CG1234^f00646

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 1 )

Molecular Function

CV term

Evidence

References

binding

inferred from electronic annotation with InterPro:IPR016024

(FlyBase Curators et al., 2004-)

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG1234 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

66065

Orthologs

Genome-wide drosophilid orthologs

Dana\GF17313

Dere\GG25293

Dgri\GH19284

Dmoj\GI23496

Dper\GL12190

Dpse\GA11564

Dsec\GM10495

Dsim\GD19492

Dvir\GJ10246

Dwil\GK12258

Dyak\GE25803

Curated drosophilid orthologs

Dpse\GA11564

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000023490
Anopheles gambiae (Ensembl)
ENSBTAP00000015105
Bos taurus (Ensembl)
ENSCAFP00000011885
Canis familiaris (Ensembl)
NEWSINFRUP00000155643
Takifugu rubripes (Ensembl)
ENSGALP00000010528
Gallus gallus (Ensembl)
ENSP00000312669
Homo sapiens (Ensembl)
ENSMMUP00000002172
Macaca mulatta (Ensembl)
ENSMODP00000007016
Monodelphis domestica (Ensembl)
ENSPTRP00000004846
Pan troglodytes (Ensembl)
ENSRNOP00000019056
Rattus norvegicus (Ensembl)
GSTENP00034345001
Tetraodon nigroviridis (Ensembl)
ENSXETP00000045339
Xenopus tropicalis (Ensembl)
Q656B0
Oryza sativa (Gramene)
AT1G79150.1
Arabidopsis thaliana (Arabidopsis)
WBGene00030551
Caenorhabditis briggsae (Wormbase)
WBGene00016508
Caenorhabditis elegans (Wormbase)
ZDB-GENE-030131-9878
Danio rerio (Zfin)
DDB0192052
Dictyostelium discoideum (Dictybase)
MGI:1932610
Mus musculus (Informatics)
YLR002C
Saccharomyces cerevisiae (Yeastgenome)
SPBC887.03c
Schizosaccharomyces pombe (Sanger)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 5 )

Harvard

PBac{RB}CG1234^e01488

PBac{WH}CG1234^f00646

VDRC

v17084

w¹¹¹⁸; P{GD7574}v17084

v17083

w¹¹¹⁸; P{GD7574}v17083/CyO

Bloomington

17958

w¹¹¹⁸; PBac{RB}CG1234^e01488/TM6B, Tb¹

Genomic Clones ( 1 )

BACR01C11

cDNA Clones ( 22 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

LD35257

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0037489

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0037489

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_141453

RefSeq (Proteins)

•

NP_649710

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q9VI82

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

CBF (IPR005612)

Nucleolar complex-associated (IPR011501)

Armadillo-type fold (IPR016024)

Nucleolar complex-associated protein 3 (IPR016903)

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

66065

DEDB - Drosophila exon database: splicing graphs

•

8457

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0037489

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0037489

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0037489

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0037489

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0037489

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0037489

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000023490
Anopheles gambiae (Ensembl)
ENSBTAP00000015105
Bos taurus (Ensembl)
ENSCAFP00000011885
Canis familiaris (Ensembl)
NEWSINFRUP00000155643
Takifugu rubripes (Ensembl)
ENSGALP00000010528
Gallus gallus (Ensembl)
ENSP00000312669
Homo sapiens (Ensembl)
ENSMMUP00000002172
Macaca mulatta (Ensembl)
ENSMODP00000007016
Monodelphis domestica (Ensembl)
ENSPTRP00000004846
Pan troglodytes (Ensembl)
ENSRNOP00000019056
Rattus norvegicus (Ensembl)
GSTENP00034345001
Tetraodon nigroviridis (Ensembl)
ENSXETP00000045339
Xenopus tropicalis (Ensembl)
Q656B0
Oryza sativa (Gramene)
AT1G79150.1
Arabidopsis thaliana (Arabidopsis)
WBGene00030551
Caenorhabditis briggsae (Wormbase)
WBGene00016508
Caenorhabditis elegans (Wormbase)
ZDB-GENE-030131-9878
Danio rerio (Zfin)
DDB0192052
Dictyostelium discoideum (Dictybase)
MGI:1932610
Mus musculus (Informatics)
YLR002C
Saccharomyces cerevisiae (Yeastgenome)
SPBC887.03c
Schizosaccharomyces pombe (Sanger)

PANTHER - Protein classification by function, families, and pathways

•

FBgn0037489

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG1234

Name Synonym

CG1234

Secondary FlyBase IDs

References ( 8 )

Supplementary material

Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.: Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

Computer file

Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.: Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]