A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG1116

General Information
SymbolDmel\CG1116SpeciesD. melanogaster
NameCG1116Annotation symbolCG1116
Feature typeprotein_coding_geneFlyBase IDFBgn0037297
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map82F6-82F6Sequence location3R:1,045,390..1,047,275 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG1116 (FBgn0037297). It has the cytological map location 82F6. Its sequence location is 3R:1045390..1047275. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
82F6-82F6  
Limits computationally determined from genome sequence between P{PZ}l(3)0273302733 and P{EP}EP974  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG1116 for information on other features
detailed view FBtr0078831 FBtr0078775 FBtr0078774 FBtr0078776 FBtr0078830 FBtr0078828 FBtr0078829 FBpp0078473 FBpp0078422 FBpp0078423 FBpp0078421 FBpp0078471 FBpp0078470 FBpp0078472 FBti0099967 FBti0070835 FBti0027388
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG1116-RA
FBtr0078775
 NM_141259
  1564
  442
CG1116-RB
FBtr0078774
 NM_169028
  1627
  360
CG1116-RC
FBtr0078776
 NM_169027
  1630
  442
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG1116-PA  
FBpp0078422  
49.4  
442  
8.35  
  NP_649516
  AAF52065
CG1116-PB  
FBpp0078421  
40.4  
360  
9.28  
  NP_730895
  AAN13262
CG1116-PC  
FBpp0078423  
49.4  
442  
8.35  
  NP_730894
  AAF52064
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
Rgp1 (IPR014848)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AA803464
 
AE003603
AAF52064
 
AE003603
AAF52065
 
AE003603
AAN13262
 
AI063833
 
AI064211
 
AI518470
 
AI519240
 
AX094213
 
BI351753
 
BI352357
 
BI352901
 
BI355890
 
BI371345
 
BI620872
 
BI637393
 
BT010211
AAQ23529
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (BDGP Project Members, 2000-)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0078831 FBtr0078775 FBtr0078774 FBtr0078776 FBtr0078830 FBtr0078828 FBtr0078829
        AI108716
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        viable
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 2 )
        For All Classical Alleles Show

        Allele of CG1116ClassMutagenStocksKnown lesion
        CG1116CB035110 Yes
        CG1116EY156121 --
        hide Alleles Carried on Transgenic Constructs ( 1 )
        For All Alleles Carried on Transgenic Constructs Show

        Allele of CG1116ClassMutagenStocksKnown lesion
        CG1116GD72171 Yes
        hide Aneuploid Aberrations
        Useful deficiency
         
        Useful duplication
         
        hide Transgenic Constructs & Insertions
        Transgenic Constructs
        Type of construct
        Name
        Expression data
        UAS construct
        P{GD7217}
        NA
        Insertions
        Type of insertions
        Name
        Expression data
        miscellaneous insertions
        P{PTT-GB}CG1116CB03511
        NA
        insertion of mobile activating element
        P{EPgy2}CG1116EY15612
        NA
        hide Related Comments
        Please look at the allele reports for the complete phenotype data
        hide Gene Ontology: Function, Process & Cellular Component ( 0 )
        hide Molecular Function
        CV term
        Evidence
        References
        hide Biological Process
        CV term
        Evidence
        References
        hide Cellular Component
        CV term
        Evidence
        References
        hide Sequence Ontology: Class of Gene
        protein_coding_gene
         
        nuclear_gene
         
        hide Interactions & Pathways
        hide Summary of Genetic Interactions
        Interacts with
        Please look at the allele data for full details of the genetic interactions
        CG1116 allele
        Gene
        References
        hide External Data
        Linkouts
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        hide Orthologs
        Genome-wide drosophilid orthologs
        Curated drosophilid orthologs
         
        Linkouts
        InParanoid orthologs - Eukaryotic orthologs
        •
        hide Functional Complementation between Species
        hide Inter-Species Misexpression Data
        Produces phenotype in
        Produces NO phenotype in
        hide Stocks & Reagents
        hide Stocks Listed in FlyBase ( 2 )
        VDRC
        v18161
        w1118; P{GD7217}v18161
        Bloomington
        21149
        y1 w67c23; P{EPgy2}CG1116EY15612/TM3, Sb1 Ser1
        hide Genomic Clones ( 1 )
        hide cDNA Clones ( 11 )
        Please Note
        This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
        cDNA Clones, Fully Sequenced
        BDGP DGC clones
        Other clones
        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
        Other clones
        hide RNAi & Array Information
        Affy Oligo
        Linkouts
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        hide Antibody Information
        hide Other Information
        hide Discoverer
        hide Etymology
        hide Identification
        hide Position Effect Variegation Data
        hide Relationship to Other Genes
        Source for database identity of
        Source for database merge of
        Source for merge of: CG1116 anon-WO0118547.337 Source for merge of CG1116 anon-WO0118547.337 was sequence comparison (date:051113).
        (FlyBase, 1996-)
        Additional comments
        hide Comments About Role
        hide Comments About Molecular Function
        hide Other Comments
        Area matching Drosophila EST AA803464. This EST has sequence similarity to Human hypothetical gene KIAA0258.
        (Davies, 2001.3.15)
        hide External Crossreferences & Linkouts
        Sequence Crossreferences
        RefSeq (Transcripts)
        •
        RefSeq (Proteins)
        •
        DDBJ / EMBL / GenBank
        •
        UniProtKB/TrEMBL
        •
        Other Crossreferences
        InterPro domains - A database of protein families, domains, and functional sites
        •
        Rgp1 (IPR014848)
        Linkouts
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        DEDB - Drosophila exon database: splicing graphs
        •
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        InParanoid orthologs - Eukaryotic orthologs
        •
        PANTHER - Protein classification by function, families, and pathways
        •
        University of Chicago Dev. Expression
        •
        hide Synonyms & Secondary IDs ( 2 )
        Reported As
        Symbol Synonym
        anon-WO0118547.337
         
        CG1116
        (Buszczak et al., 2007)
        Name Synonym
        CG1116
         
        Secondary FlyBase IDs
        • FBgn0062084
        hide References ( 9 )
        Research paper
        Buszczak et al., 2007, Genetics 175(3): 1505--1531
        The Carnegie protein trap library: A versatile tool for Drosophila developmental studies. [FBrf0200345]
        Supplementary material
        Giot et al., 2003, Science 302(5651):
        Tables S1 to S7. [FBrf0166452]
        Personal communication to FlyBase
        Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
        RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
        FlyBase analysis
        FlyBase, 1996-, FlyBase inference based on genome sequence analysis.
        FlyBase inference based on genome sequence analysis. [FBrf0104946]
        FlyBase, 1992-, FlyBase curation
        FlyBase curation. [FBrf0105495]
        DNA/RNA sequence record
        Davies, 2001.3.15, GenBank/EMBL/DDBJ: AX094213
        Sequence 337 from Patent WO0118547. [FBrf0150043]
        Patent
        Davies et al., 2001, World Patent 0118547:
        Essential genes and assays relating thereto. [FBrf0199103]
        Computer file
        Gene Disruption Project members, 2001-, [title not yet available]
        [title not yet available] [FBrf0132177]
        BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
        Berkeley Drosophila Genome Project. [FBrf0125078]