A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG10289

General Information
SymbolDmel\CG10289SpeciesD. melanogaster
NameCG10289Annotation symbolCG10289
Feature typeprotein_coding_geneFlyBase IDFBgn0035688
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map65A7-65A7Sequence location3L:6,162,651..6,166,966 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG10289 (FBgn0035688). It has the cytological map location 65A7. Its sequence location is 3L:6162651..6166966. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
65A7-65A7  
Limits computationally determined from genome sequence between P{PZ}loj04026 and P{PZ}l(3)0209402094  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG10289 for information on other features
detailed view FBtr0077019 FBtr0076998 FBpp0076727 FBpp0076706 FBti0042132 FBti0064766 FBti0041640 FBti0047930
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG10289-RA
FBtr0077019
 NM_139776
  3433
  991
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG10289-PA  
FBpp0076727  
111.2  
991  
4.11  
  NP_648033
  AAF50681
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
SIT4 phosphatase-associated protein (IPR007587)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AA941079
 
AE003563
AAF50681
 
AI259668
 
AI514883
 
AI532511
 
AI533642
 
AI534148
 
AI546506
 
AW944262
 
AY061576
AAL29124
 
BI167947
 
BI170307
 
BI369140
 
BI637285
 
BP558361
 
CK131792
 
CK131947
 
CK657430
 
CK659416
 
CK660492
 
CK660592
 
CO178084
 
CO266583
 
CO268856
 
CO270786
 
CO271528
 
CO293223
 
CO303480
 
CO304126
 
CO306580
 
CO309413
 
CO312555
 
CO318730
 
CO321451
 
CO325560
 
CO328018
 
CO329333
 
CO332202
 
CO340199
 
CZ485054
 
CZ485055
 
EC072559
 
EC075883
 
EC079010
 
EC082777
 
EC088583
 
EC202467
 
EC209000
 
EC210434
 
EC213623
 
EC214472
 
EC216176
 
EC223400
 
EC230163
 
EC233845
 
EC236792
 
EC240493
 
EC247111
 
EC250186
 
EC251111
 
EC251596
 
EC259970
 
EL879356
 
EL879487
 
EL879488
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (BDGP Project Members, 2000-)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0077019 FBtr0076998
        AI546506
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 2 )
        For All Classical Alleles Show

        Allele of CG10289ClassMutagenStocksKnown lesion
        CG10289HP31503
          		1 --
          CG10289f025302 --
          hide Alleles Carried on Transgenic Constructs ( 1 )
          For All Alleles Carried on Transgenic Constructs Show

          Allele of CG10289ClassMutagenStocksKnown lesion
          CG10289GD69282 Yes
          hide Aneuploid Aberrations
          Useful deficiency
           
          Useful duplication
           
          Disrupted in
          (Ryder, 2004.4.26)
          hide Transgenic Constructs & Insertions
          Transgenic Constructs
          Type of construct
          Name
          Expression data
          UAS construct
          P{GD6928}
          NA
          Insertions
          Type of insertions
          Name
          Expression data
          miscellaneous insertions
          PBac{WH}CG10289f02530
          NA
          insertion of mobile activating element
          P{EPg}CG10289HP31503
          NA
          hide Related Comments
          Please look at the allele reports for the complete phenotype data
          hide Gene Ontology: Function, Process & Cellular Component ( 0 )
          hide Molecular Function
          CV term
          Evidence
          References
          hide Biological Process
          CV term
          Evidence
          References
          hide Cellular Component
          CV term
          Evidence
          References
          hide Sequence Ontology: Class of Gene
          protein_coding_gene
           
          nuclear_gene
           
          hide Interactions & Pathways
          hide Summary of Genetic Interactions
          Interacts with
          Please look at the allele data for full details of the genetic interactions
          CG10289 allele
          Gene
          References
          hide External Data
          Linkouts
          BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
          •
          hide Orthologs
          Genome-wide drosophilid orthologs
          Curated drosophilid orthologs
           
          Linkouts
          InParanoid orthologs - Eukaryotic orthologs
          •
          hide Functional Complementation between Species
          hide Inter-Species Misexpression Data
          Produces phenotype in
          Produces NO phenotype in
          hide Stocks & Reagents
          hide Stocks Listed in FlyBase ( 5 )
          Harvard
          -
          PBac{WH}CG10289f02530
          VDRC
          v16006
          w1118 P{GD6928}v16006
          v16005
          w1118; P{GD6928}v16005/CyO
          Bloomington
          21962
          w1118; P{EPg}CG10289HP31503
          18559
          w1118; PBac{WH}CG10289f02530/TM6B, Tb1
          hide Genomic Clones ( 1 )
          hide cDNA Clones ( 37 )
          Please Note
          This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
          cDNA Clones, Fully Sequenced
          BDGP DGC clones
          Other clones
          cDNA Clones, End Sequenced (ESTs)
          BDGP DGC clones
          Other clones
          hide RNAi & Array Information
          Affy Oligo
          Linkouts
          DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
          •
          GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
          •
          hide Antibody Information
          hide Other Information
          hide Discoverer
          hide Etymology
          hide Identification
          hide Position Effect Variegation Data
          hide Relationship to Other Genes
          Source for database identity of
          Source for database merge of
          Additional comments
          hide Comments About Role
          hide Comments About Molecular Function
          hide Other Comments
          hide External Crossreferences & Linkouts
          Sequence Crossreferences
          RefSeq (Transcripts)
          •
          RefSeq (Proteins)
          •
          DDBJ / EMBL / GenBank
          •
          UniProtKB/TrEMBL
          •
          Other Crossreferences
          InterPro domains - A database of protein families, domains, and functional sites
          •
          SIT4 phosphatase-associated protein (IPR007587)
          Linkouts
          BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
          •
          DEDB - Drosophila exon database: splicing graphs
          •
          DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
          •
          FLIGHT - Cell culture data for RNAi and other high-throughput technologies
          •
          FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
          •
          FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
          •
          GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
          •
          GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
          •
          InParanoid orthologs - Eukaryotic orthologs
          •
          PANTHER - Protein classification by function, families, and pathways
          •
          University of Chicago Dev. Expression
          •
          hide Synonyms & Secondary IDs ( 1 )
          Reported As
          Symbol Synonym
          CG10289
          (Stuart et al., 2007)
          Name Synonym
          CG10289
           
          Secondary FlyBase IDs
            hide References ( 10 )
            Research paper
            Stuart et al., 2007, Nature 445(7123): 95--101
            A systems biology analysis of the Drosophila phagosome. [FBrf0195342]
            Supplementary material
            Giot et al., 2003, Science 302(5651):
            Tables S1 to S7. [FBrf0166452]
            Personal communication to FlyBase
            Matthews, 2008.4.15, DP and HP P-element insertions submitted to the Bloomington Drosophila Stock Center.
            DP and HP P-element insertions submitted to the Bloomington Drosophila Stock Center. [FBrf0204789]
            Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
            RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
            Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
            Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
            Ryder, 2004.4.26, Exelixis CG deletion data.
            Exelixis CG deletion data. [FBrf0184335]
            FlyBase analysis
            FlyBase, 1992-, FlyBase curation
            FlyBase curation. [FBrf0105495]
            Computer file
            Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
            Genomic mapping of Exelixis insertion collection. [FBrf0184340]
            Gene Disruption Project members, 2001-, [title not yet available]
            [title not yet available] [FBrf0132177]
            BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
            Berkeley Drosophila Genome Project. [FBrf0125078]