Gene Dmel\CG1244

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General Information

Symbol

Dmel\CG1244

Species

D. melanogaster

Name

CG1244

Annotation symbol

CG1244

Feature type

protein_coding_gene

FlyBase ID

FBgn0035357

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

62E8-62E8

Sequence location

3L:2,631,720..2,641,977 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG1244 (FBgn0035357). It has the cytological map location 62E8. Its sequence location is 3L:2631720..2641977. Its molecular function is described as zinc ion binding. It is involved in the biological process dendrite morphogenesis. 5 alleles are reported. No phenotypic data is available. It has 7 annotated transcripts and 7 annotated polypeptides.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

62E8-62E8

Limits computationally determined from genome sequence between P{PZ}Spn⁰⁶⁹¹¹ and P{PZ}l(3)06803⁰⁶⁸⁰³

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

62F1-62F2

(determined by in situ hybridisation)

(Lukacsovich et al., 2001)

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG1244 for information on other features

Comments on Gene Model

gene_with_dicistronic_processed_transcript ; SO:0000722

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG1244-RA

FBtr0072932

NM_139476

4954

1152

CG1244-RB

FBtr0072933

NM_167958

4947

1152

CG1244-RC

FBtr0072931

NM_167959

5099

1152

CG1244-RD

FBtr0072934

NM_167960

4725

1152

CG1244-RE

FBtr0072936

NM_167961

4548

1152

CG1244-RF

FBtr0072935

NM_167962

4538

1152

CG1244-RG

FBtr0290340

5159

1152

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG1244-PA

FBpp0072809

124.1

1152

4.65

NP_647733

AAG22230

CG1244-PB

FBpp0072810

124.1

1152

4.65

NP_728761

AAF47669

CG1244-PC

FBpp0072808

124.1

1152

4.65

NP_728762

AAF47670

CG1244-PD

FBpp0072811

124.1

1152

4.65

NP_728763

AAG22231

CG1244-PE

FBpp0072813

124.1

1152

4.65

NP_728764

AAN11519

CG1244-PF

FBpp0072812

124.1

1152

4.65

NP_728765

AAN11520

CG1244-PG

FBpp0288779

124.1

1152

4.65

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0035357

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Zinc finger, C2H2-type (IPR007087)

Zinc finger, C2H2-like (IPR015880)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Maps to

BACR22P20-T7

(Lukacsovich et al., 2001)

Does NOT map to

Identified with

LD26015

(Lukacsovich et al., 2001)

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

2116

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Microarray Data

Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)

Untitled Document detailed view

AI511966
AA940791
AI064394
AA817226

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0035357

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0035357

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0035357

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

lethal | recessive

CG1244^GTD74-56

Phenotype manifest in

Allele

Classical Alleles ( 4 )

For All Classical Alleles Show

Allele of CG1244	Mutagen	Stocks	Known lesion
CG1244^C240		0	--
CG1244^EY04917	P-element activity	1	--
CG1244^GTD74-56	P-element activity	0	Yes
CG1244^f05384	piggyBac transposase	1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG1244	Class	Mutagen	Stocks	Known lesion
CG1244^GD7728		in vitro construct \| RNAi in vitro construct \| regulatory fusion	2	Yes

Aneuploid Aberrations

Useful deficiency

Df(3L)Mg27

Useful duplication

Dp(3;3)SMG38

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD7728}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{3HPy⁺}CG1244^C240

PBac{WH}CG1244^f05384

P{GTD-b}CG1244^GTD74-56

insertion of mobile activating element

P{EPgy2}CG1244^EY04917</