HomeGene Dmel\CG3800
| General Information | |||
|---|---|---|---|
| Symbol | Dmel\CG3800 | Species | D. melanogaster |
| Name | CG3800 | Annotation symbol | CG3800 |
| Feature type | protein_coding_gene | FlyBase ID | FBgn0034802 |
| Created / Updated | 2003-12-01/2003-12-01 | ||
| Genomic Location | |||
| Chromosome (arm) | 2R | Recombination map | |
| Cytogenetic map | 59B6-59B6 | Sequence location | 2R:18,822,096..18,824,453 [-] |
| Map ( GBrowse ) | 
| ||
Summary Information
| |||
|
Automatically generated summary
See sections below for more information | This gene is referred to in FlyBase by the symbol CG3800 (FBgn0034802). It has the cytological map location 59B6. Its sequence location is 2R:18822096..18824453. Its molecular function is described as: nucleic acid binding; zinc ion binding. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. | ||
|
Detailed Mapping Data
| |||
| FlyBase Computed Cytological Location | |||
Cytogenetic map Evidence for location 59B6-59B6
Limits computationally determined from genome sequence between P{PZ}Nup21410444 and P{PZ}l(2)0649606496&P{lacW}l(2)k09913k09913
| |||
| Experimentally Determined Cytological Location | |||
Cytogenetic map Notes References | |||
| Experimentally Determined Recombination Data | |||
| Location | |||
| Left of (cM) | |||
| Right of (cM) | |||
| Notes | |||
| Molecular Map Data | |||
Gene Order (in direction of increasing cytology)
References Gene Order (overall orientation not stated) References | |||
|
Gene Model & Products
| |||
Please see the
GBrowse view of
Dmel\CG3800
for information on other features
| |||
| Comments on Gene Model | |||
DGC clone GM14667 appears problematic: incomplete CDS GB:AAF46932 uses a downstream ATG as its translation start, resulting in a peptide that is 41 aminoacids shorter than this protein model. | |||
|
Transcript Data
| |||
| Annotated Transcripts | |||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) | |||
| Additional Transcript Data & Comments | |||
| Reported size (kB) | |||
| Comments | |||
| External Data | |||
| Crossreferences | |||
|
Polypeptide Data
| |||
| Annotated Polypeptides | |||
Name FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
| |||
| Additional Polypeptide Data & Comments | |||
| Reported size (kD) | |||
| Comments | |||
| External Data | |||
| Linkouts | PANTHER
- Protein classification by function, families, and pathways
| ||
| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• Zinc finger, CCHC-type (IPR001878)
Zinc finger, CCHC retroviral-type (IPR013084)
| ||
|
Sequences Consistent with the Gene Model
| |||
| DDBJ
/
EMBL / GenBank | DNA sequence Protein sequence Name | ||
| UniProtKB/Swiss-Prot | |||
| UniProtKB/TrEMBL | |||
| Maps to | |||
| Does NOT map to | |||
| Identified with | |||
|
Mapped Features & Mutations
| |||
Please see
GBrowse
or insertion reports for information on insertions of transgenic
constructs and features not listed here
Type Symbol & Location Additional Notes References | |||
|
External Data
| |||
| Linkouts | DEDB
- Drosophila exon database: splicing graphs
• | ||
| Crossreferences | |||
|
Expression Data
| |||
| FlyBase-Curated Data | |||
|
Transcript and Protein data | Please see the FlyBase Gene Expression Report for details of gene expression from the literature. | ||
|
Summary of Transcript Expression
| |||
Stage Tissue/Position
Reference
| |||
| Marker for | |||
| Subcellular Localization | |||
| CV Term | |||
|
Summary of Polypeptide Expression
| |||
Stage Tissue/Position
Reference
| |||
| Marker for | |||
| Subcellular Localization | |||
| CV Term | |||
|
Microarray Data
|
|||
|
Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002) 
| |||
|
External Data & Images
| |||
| Linkouts | FLIGHT
- Cell culture data for RNAi and other high-throughput technologies
FlyAtlas
- Adult expression by tissue, using Affymetrix Dros2 array
GEO (NCBI)
- Gene expression data: microarray and other high-throughput technologies
FlyExpress
- Embryonic expression images (BDGP data)
| ||
Stage(s)
4-6
Stage(s)
9-10
Stage(s)
11-12