Gene Dmel\CG30152

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General Information

Symbol

Dmel\CG30152

Species

D. melanogaster

Name

CG30152

Annotation symbol

CG30152

Feature type

protein_coding_gene

FlyBase ID

FBgn0034543

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

57A10-57A10

Sequence location

2R:16,558,708..16,560,059 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG30152 (FBgn0034543). It has the cytological map location 57A10. Its sequence location is 2R:16558708..16560059. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

57A10-57A10

Limits computationally determined from genome sequence between P{lacW}l(2)k02206^k02206 and P{lacW}l(2)k06409^k06409&P{PZ}insc⁰⁵⁴⁷⁵

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG30152 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG30152-RA

FBtr0086236

NM_137665

955

218

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG30152-PA

FBpp0085549

23.8

218

4.63

NP_611509

AAF57428

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Protein of unknown function DUF59 (IPR002744)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9V968

UniProtKB/TrEMBL

Maps to

Does NOT map to

Identified with

LP10549

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0034543

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0034543

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of CG30152	Class	Mutagen	Stocks	Known lesion
CG30152^EP2098		P-element activity	1	--
CG30152^EY01427		P-element activity	1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG30152	Class	Mutagen	Stocks	Known lesion
CG30152^GD8668		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Useful deficiency

Df(2R)exu1

Useful duplication

Dp(2;Y)53D;57C

Disrupted in

Df(2R)Exel6070

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD8668}

Insertions

Type of insertions

Name

Expression data

insertion of enhancer trap

P{lacW}l(2)SH0951^SH0951

insertion of mobile activating element

P{EPgy2}CG30152^EY01427

P{EP}CG30152^EP2098

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 3 )

Molecular Function

CV term

Evidence

References

molecular_function

no biological data available

(FlyBase Curators, 2002-)

Biological Process

CV term

Evidence

References

biological_process

no biological data available

(FlyBase Curators, 2002-)

Cellular Component

CV term

Evidence

References

cellular_component

no biological data available

(FlyBase Curators, 2002-)

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG30152 allele

Gene

References

External Data

Linkouts

Orthologs

Genome-wide drosophilid orthologs

Dana\GF12194

Dere\GG22053

Dgri\GH21994

Dmoj\GI19694

Dper\GL17044

Dpse\GA15681

Dsec\GM22037

Dsim\GD11534

Dvir\GJ17321

Dwil\GK21825

Dyak\GE12134

Curated drosophilid orthologs

Dafs\CG30152

(Bartolome and Charlesworth, 2006)

Dmir\CG10404

(Bachtrog, 2003, Bachtrog and Charlesworth, 2003)

Dpse\GA15681

(Bachtrog, 2003, Bartolome and Charlesworth, 2006)

Linkouts

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 4 )

Szeged

P{EP}CG30152^EP2098

P{lacW}l(2)SH0951^SH0951

VDRC

v38848

w¹¹¹⁸; P{GD8668}v38848

Bloomington

15353

y¹ w^67c23; P{EPgy2}CG30152^EY01427

Genomic Clones ( 2 )

cDNA Clones ( 10 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0034543

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: CG10404 CG30152 Source for merge of CG10404 CG30152 was a shared cDNA (date:030728).

(FlyBase, 1996-)

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

Annotation CG10404 renamed CG30152 in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_137665

RefSeq (Proteins)

•

NP_611509

DDBJ / EMBL / GenBank

•

UniProtKB/Swiss-Prot

•

Q9V968

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Protein of unknown function DUF59 (IPR002744)

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0034543

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0034543

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0034543

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0034543

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

CG10404

(Yepiskoposyan et al., 2006)

CG30152

(Yepiskoposyan et al., 2006)

Cg30152

(Bartolome and Charlesworth, 2006)

Name Synonym

CG30152

Secondary FlyBase IDs

FBgn0050152

References ( 15 )

Research paper

Bartolome and Charlesworth, 2006, Genetics 173(2): 779--791: Rates and patterns of chromosomal evolution in Drosophila pseudoobscura and D. miranda. [FBrf0193909]
Bartolome and Charlesworth, 2006, Genetics 174(4): 2033--2044: Evolution of amino-acid sequences and codon usage on the Drosophila miranda neo-sex chromosomes. [FBrf0191994]
Yepiskoposyan et al., 2006, Nucleic Acids Res. 34(17): 4866--4877: Transcriptome response to heavy metal stress in Drosophila reveals a new zinc transporter that confers resistance to zinc. [FBrf0193346]
Bachtrog, 2003, Molec. Biol. Evol. 20(2): 173--181: Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda. [FBrf0159190]
Bachtrog and Charlesworth, 2003, Genetics 164(3): 1237--1240: On the genomic location of the exuperantia1 Gene in Drosophila miranda: The limits of in situ hybridization experiments. [FBrf0160390]
Bachtrog, 2003, Genetics 165(3): 1221--1232: Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda. [FBrf0167628]

Supplementary material

Oh et al., 2003, Genetics 163(1):: Table S1. [FBrf0157097]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

FlyBase analysis

FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase.: Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]

Computer file

Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]

Protein sequence record

Swiss-Prot Project Members, 2002.3.1, UniProtKB: Q9V968: Hypothetical protein CG10404. [FBrf0151102]