A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG8207

General Information
SymbolDmel\CG8207SpeciesD. melanogaster
NameCG8207Annotation symbolCG8207
Feature typeprotein_coding_geneFlyBase IDFBgn0034035
Created / Updated2003-12-02/2003-12-02
Genomic Location
Chromosome (arm)2RRecombination map
Cytogenetic map52B5-52B5Sequence location2R:11,564,721..11,566,444 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG8207 (FBgn0034035). It has the cytological map location 52B5. Its sequence location is 2R:11564721..11566444. Its molecular function is described as: mannose-1-phosphate guanylyltransferase activity; acyltransferase activity. It is involved in the biological process biosynthetic process. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
52B5-52B5  
Limits computationally determined from genome sequence between P{lacW}Vha36k07207 and P{lacW}l(2)k05713k05713  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG8207 for information on other features
detailed view FBtr0087346 FBtr0087343 FBtr0087344 FBtr0087342 FBtr0087341 FBtr0087277 FBpp0086475 FBpp0086474 FBpp0086415 FBti0046153 FBti0066709 FBti0056210 FBti0069509 FBti0054488 FBti0069987 FBti0056661 FBti0070191 FBti0054489 FBti0044470 FBti0035231 FBti0040975 FBti0057823 FBti0065657 FBti0025947 FBti0042251
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG8207-RA
FBtr0087342
 NM_137207
  1547
  438
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG8207-PA  
FBpp0086475  
48.1  
438  
7.79  
  NP_611051
  AAF58116
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
Bacterial transferase hexapeptide repeat (IPR001451)
Nucleotidyl transferase (IPR005835)
Trimeric LpxA-like (IPR011004)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AE003810
AAF58116
 
AY084132
AAL89870
 
BI214984
 
BI216133
 
BI235307
 
BI356515
 
BI369256
 
BI373471
 
BI635821
 
CK657130
 
CO277971
 
CO286346
 
CO306030
 
CO328712
 
CO331072
 
EC061053
 
EC082091
 
EC088881
 
EC207452
 
EC218219
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (BDGP Project Members, 2000-)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        BDGP expression data
        •
        Show all BDGP original images, annotations and embryonic microarray data for CG8207
        FlyExpress - Embryonic expression images (BDGP data)
        •
        Show all FlyExpress processed images for CG8207
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 0 )
        For All Classical Alleles Show

        Allele of CG8207ClassMutagenStocksKnown lesion
        hide Alleles Carried on Transgenic Constructs ( 1 )
        For All Alleles Carried on Transgenic Constructs Show

        Allele of CG8207ClassMutagenStocksKnown lesion
        CG8207GD138431 Yes
        hide Aneuploid Aberrations
        Useful deficiency
         
        Useful duplication
         
        Disrupted in
        (Ryder, 2004.4.26)
        hide Transgenic Constructs & Insertions
        Transgenic Constructs
        Type of construct
        Name
        Expression data
        UAS construct
        P{GD13843}
        NA
        Insertions
        Type of insertions
        Name
        Expression data
        hide Related Comments
        Please look at the allele reports for the complete phenotype data
        hide Gene Ontology: Function, Process & Cellular Component ( 3 )
        hide Molecular Function
        CV term
        Evidence
        References
        acyltransferase activity
        inferred from electronic annotation with InterPro:IPR001451
        (FlyBase Curators et al., 2004-)
        mannose-1-phosphate guanylyltransferase activity
        inferred from sequence or structural similarity with EMBL:AL022600; protein_id:CAA18655
        (FlyBase, 1992-)
        hide Biological Process
        CV term
        Evidence
        References
        biosynthetic process
        inferred from electronic annotation with InterPro:IPR005835
        (FlyBase Curators et al., 2004-)
        hide Cellular Component
        CV term
        Evidence
        References
        hide Sequence Ontology: Class of Gene
        protein_coding_gene
         
        nuclear_gene
         
        hide Interactions & Pathways
        hide Summary of Genetic Interactions
        Interacts with
        Please look at the allele data for full details of the genetic interactions
        CG8207 allele
        Gene
        References
        hide External Data
        Linkouts
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        hide Orthologs
        Genome-wide drosophilid orthologs
        Curated drosophilid orthologs
         
        Linkouts
        InParanoid orthologs - Eukaryotic orthologs
        •
        hide Functional Complementation between Species
        hide Inter-Species Misexpression Data
        Produces phenotype in
        Produces NO phenotype in
        hide Stocks & Reagents
        hide Stocks Listed in FlyBase ( 1 )
        VDRC
        v24236
        w1118; P{GD13843}v24236
        hide Genomic Clones ( 2 )
        hide cDNA Clones ( 13 )
        Please Note
        This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
        cDNA Clones, Fully Sequenced
        BDGP DGC clones
        Other clones
        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
        Other clones
        hide RNAi & Array Information
        Affy Oligo
        Linkouts
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        hide Antibody Information
        hide Other Information
        hide Discoverer
        hide Etymology
        hide Identification
        hide Position Effect Variegation Data
        hide Relationship to Other Genes
        Source for database identity of
        Source for database merge of
        Additional comments
        FlyBase curator comment: the insertion in the "c01762" Exelixis line (PBac{PB}Vha14c01762) was originally assigned to the CG8207 gene in FBrf0179797, resulting in the "CG8207c01762" (FBal0160942) allele. However, FBrf0184340 shows that the insertion is actually within Vha14.
        (Bloomington Drosophila Stock Center, 2004.11.6)
        hide Comments About Role
        hide Comments About Molecular Function
        hide Other Comments
        hide External Crossreferences & Linkouts
        Sequence Crossreferences
        RefSeq (Transcripts)
        •
        RefSeq (Proteins)
        •
        DDBJ / EMBL / GenBank
        •
        UniProtKB/TrEMBL
        •
        Other Crossreferences
        InterPro domains - A database of protein families, domains, and functional sites
        •
        Bacterial transferase hexapeptide repeat (IPR001451)
        Nucleotidyl transferase (IPR005835)
        Trimeric LpxA-like (IPR011004)
        Linkouts
        BDGP expression data
        •
        Show all BDGP original images, annotations and embryonic microarray data for CG8207
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        DEDB - Drosophila exon database: splicing graphs
        •
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        FlyExpress - Embryonic expression images (BDGP data)
        •
        FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        InParanoid orthologs - Eukaryotic orthologs
        •
        PANTHER - Protein classification by function, families, and pathways
        •
        hide Synonyms & Secondary IDs ( 2 )
        Reported As
        Symbol Synonym
        CG8207
         
        unnamed
        (Wakabayashi-Ito et al., 2001)
        Name Synonym
        CG8207
         
        Secondary FlyBase IDs
          hide References ( 10 )
          Research paper
          Wakabayashi-Ito et al., 2001, Dev. Biol. 229(1): 44--54
          fusilli, an essential gene with a maternal role in Drosophila embryonic dorsal-ventral patterning. [FBrf0132288]
          Supplementary material
          Giot et al., 2003, Science 302(5651):
          Tables S1 to S7. [FBrf0166452]
          Personal communication to FlyBase
          Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
          RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
          Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
          Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
          FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
          Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
          Ryder, 2004.4.26, Exelixis CG deletion data.
          Exelixis CG deletion data. [FBrf0184335]
          Wakabayashi-Ito, 2001.7.19, Sequence of the first exon of the unpublished fusilli cDNA.
          Sequence of the first exon of the unpublished fusilli cDNA. [FBrf0137135]
          FlyBase analysis
          FlyBase, 1992-, FlyBase curation
          FlyBase curation. [FBrf0105495]
          Computer file
          BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
          Berkeley Drosophila Genome Project. [FBrf0125078]
          Curated genome annotation
          Kodira, 1999.11, [Annotations performed at the Celera Jamboreee.]
          [Annotations performed at the Celera Jamboreee.] [FBrf0126678]