Gene Dmel\CG13101

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General Information

Symbol

Dmel\CG13101

Species

D. melanogaster

Name

CG13101

Annotation symbol

CG13101

Feature type

protein_coding_gene

FlyBase ID

FBgn0032084

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

29F6-29F6

Sequence location

2L:8,977,882..8,984,870 [-]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG13101 (FBgn0032084). It has the cytological map location 29F6. Its sequence location is 2L:8977882..8984870. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. The phenotype of these alleles is annotated with anterior fascicle. It has 2 annotated transcripts and 2 annotated polypeptides.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

29F6-29F6

Limits computationally determined from genome sequence between P{lacW}l(2)k04003^k04003 and P{PZ}tai⁰¹³⁵¹

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG13101 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG13101-RA

FBtr0079783

NM_135420

1474

318

CG13101-RB

FBtr0079784

NM_164841

1539

318

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG13101-PA

FBpp0079383

37.0

318

8.80

NP_609264

AAF52731

CG13101-PB

FBpp0079384

37.0

318

8.80

NP_723433

AAN10684

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0032084

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VLG1

Maps to

Does NOT map to

Identified with

LD06593

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

6996

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0032084

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0032084

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0032084

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

anterior fascicle, with Scer\GAL4^elav-C155

CG13101^EP2247

Classical Alleles ( 3 )

For All Classical Alleles Show

Allele of CG13101	Mutagen	Stocks	Known lesion
CG13101^EP2247	P-element activity	1	Yes
CG13101^e01139	piggyBac transposase	2	--
CG13101^e02259	piggyBac transposase	1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG13101	Class	Mutagen	Stocks	Known lesion
CG13101^GD395		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Useful deficiency

Df(2L)TE30Cb-1

Disrupted in

Df(2L)Exel7040

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD395}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}CG13101^e01139

PBac{RB}CG13101^e02259

insertion of mobile activating element

P{EP}CG13101^EP2247

P{EP}EP2168

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 0 )

Molecular Function

CV term

Evidence

References

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG13101 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

60333

Orthologs

Genome-wide drosophilid orthologs

Dana\GF22137

Dere\GG24042

Dgri\GH25119

Dmoj\GI11990

Dper\GL25545

Dpse\GA12046

Dsec\GM12606

Dsim\GD22370

Dvir\GJ14118

Dwil\GK14787

Dyak\GE10665

Curated drosophilid orthologs

Dpse\GA12046

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000020959
Anopheles gambiae (Ensembl)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 6 )

v3428

PBac{RB}CG13101^e01139

PBac{RB}CG13101^e02259

Bloomington

17927

w¹¹¹⁸; PBac{RB}CG13101^e01139

Genomic Clones ( 2 )

cDNA Clones ( 17 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

LD06593

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0032084

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0032084

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q9VLG1

Other Crossreferences

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

60333

DEDB - Drosophila exon database: splicing graphs

•

6996

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0032084

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0032084

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0032084

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0032084

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0032084

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0032084

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000020959
Anopheles gambiae (Ensembl)

PANTHER - Protein classification by function, families, and pathways

•

FBgn0032084

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG13101

Name Synonym

CG13101

Secondary FlyBase IDs

References ( 9 )

Research paper

Kraut et al., 2001, Curr. Biol. 11(6): 417--430: A gain-of-function screen for genes controlling motor axon guidance and synaptogenesis in Drosophila. [FBrf0135708]

Supplementary material

Kraut et al., 2001, Curr. Biol. 11(6):: A gain-of-function screen for genes controlling motor axon guidance and synaptogenesis in Drosophila. [FBrf0135968]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

FlyBase analysis

FlyBase, 1992-, FlyBase curation: FlyBase curation. [FBrf0105495]

Computer file

Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.: Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]

Automatic genome annotation

FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126705]