Gene Dmel\CG11050

Help

Close All Open All

General Information

Symbol

Dmel\CG11050

Species

D. melanogaster

Name

CG11050

Annotation symbol

CG11050

Feature type

protein_coding_gene

FlyBase ID

FBgn0031836

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

26F1-26F1

Sequence location

2L:6,611,023..6,617,064 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG11050 (FBgn0031836). It has the cytological map location 26F1. Its sequence location is 2L:6611023..6617064. Its molecular function is described as catalytic activity. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

26F1-26F1

Limits computationally determined from genome sequence between P{EP}Sec61α^EP2180 and P{lacW}Ate1^k10809

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG11050 for information on other features

Comments on Gene Model

DGC clone LD22339 appears problematic: incomplete CDS

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG11050-RA

FBtr0079291

NM_135208

2045

388

CG11050-RB

FBtr0079292

NM_164694

2003

388

CG11050-RC

FBtr0079293

NM_164695

1857

388

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG11050-PA

FBpp0078921

42.5

388

6.69

NP_609052

AAF52408

CG11050-PB

FBpp0078922

42.5

388

6.69

NP_723193

AAN10588

CG11050-PC

FBpp0078923

42.5

388

6.69

NP_723194

AAN10589

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0031836

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Metal-dependent phosphohydrolase, HD region (IPR003607)

Metal-dependent phosphohydrolase, HD region, subdomain (IPR006674)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Maps to

Does NOT map to

Identified with

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

6677

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Microarray Data

Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)

Untitled Document detailed view

AA979068

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0031836

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0031836

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0031836

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 4 )

For All Classical Alleles Show

Allele of CG11050	Mutagen	Stocks	Known lesion
CG11050^EY00203	P-element activity	1	--
CG11050^d02137	P-element activity	1	--
CG11050^e02171	piggyBac transposase	1	--
CG11050^f04404	piggyBac transposase	1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG11050	Class	Mutagen	Stocks	Known lesion
CG11050^GD5342		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Useful duplication

Dp(2;2)C619

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD5342}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}CG11050^e02171

PBac{WH}CG11050^f04404

insertion of enhancer trap

P{lacW}l(2)SH1605^SH1605

insertion of mobile activating element

P{EPgy2}CG11050^EY00203

P{XP}CG11050^d02137

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 1 )

Molecular Function

CV term

Evidence

References

catalytic activity

inferred from electronic annotation with InterPro:IPR003607

(FlyBase Curators et al., 2004-)

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG11050 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

60079

Orthologs

Genome-wide drosophilid orthologs

Dana\GF15555

Dere\GG10422

Dgri\GH13875

Dmoj\GI17427

Dper\GL25580

Dpse\GA10728

Dsec\GM16183

Dsim\GD23421

Dvir\GJ18362

Dwil\GK24540

Dyak\GE13999

Curated drosophilid orthologs

Dpse\GA10728

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000012535
Anopheles gambiae (Ensembl)
ENSANGP00000013706
Anopheles gambiae (Ensembl)
ENSBTAP00000004334
Bos taurus (Ensembl)
ENSCAFP00000001458
Canis familiaris (Ensembl)
ENSCINP00000013201
Ciona intestinalis (Ensembl)
NEWSINFRUP00000128963
Takifugu rubripes (Ensembl)
ENSGALP00000023911
Gallus gallus (Ensembl)
ENSP00000316242
Homo sapiens (Ensembl)
ENSMMUP00000020085
Macaca mulatta (Ensembl)
ENSMODP00000022080
Monodelphis domestica (Ensembl)
ENSPTRP00000031708
Pan troglodytes (Ensembl)
ENSRNOP00000034339
Rattus norvegicus (Ensembl)
ENSXETP00000047233
Xenopus tropicalis (Ensembl)
Q8LQ52
Oryza sativa (Gramene)
AT2G23820.2
Arabidopsis thaliana (Arabidopsis)
WBGene00024739
Caenorhabditis briggsae (Wormbase)
ZDB-CDNA-050522-394
Danio rerio (Zfin)
ZDB-GENE-050522-394
Danio rerio (Zfin)
DDB0189090
Dictyostelium discoideum (Dictybase)
MGI:1916942
Mus musculus (Informatics)
YBR242W
Saccharomyces cerevisiae (Yeastgenome)
SPCC4G3.17
Schizosaccharomyces pombe (Sanger)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 6 )

Harvard

P{XP}CG11050^d02137

PBac{RB}CG11050^e02171

PBac{WH}CG11050^f04404

VDRC

v12371

w¹¹¹⁸; P{GD5342}v12371

Szeged

P{lacW}l(2)SH1605^SH1605

Bloomington

14815

y¹ w^67c23; P{EPgy2}CG11050^EY00203

Genomic Clones ( 1 )

BACR25K24

cDNA Clones ( 83 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

RE44531

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones