Gene Dmel\CG9135

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General Information

Symbol

Dmel\CG9135

Species

D. melanogaster

Name

CG9135

Annotation symbol

CG9135

Feature type

protein_coding_gene

FlyBase ID

FBgn0031769

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

26B3-26B3

Sequence location

2L:6,050,829..6,053,498 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG9135 (FBgn0031769). It has the cytological map location 26B3. Its sequence location is 2L:6050829..6053498. Its molecular function is described as guanyl-nucleotide exchange factor activity. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

26B3-26B3

Limits computationally determined from genome sequence between P{EP}chic^EP713&P{EP}chic^EP1095 and P{lacW}Gef26^k13720

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG9135 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG9135-RA

FBtr0079185

NM_135141

1858

487

CG9135-RB

FBtr0079186

NM_164679

2004

487

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG9135-PA

FBpp0078816

53.5

487

7.20

NP_608985

AAF52332

CG9135-PB

FBpp0078817

53.5

487

7.20

NP_723150

AAN10577

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0031769

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Regulator of chromosome condensation, RCC1 (IPR000408)

Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VMI5

Maps to

Does NOT map to

Identified with

(Oliver, 2001.8.16)

LD39815

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

6616

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Microarray Data

Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)

Untitled Document detailed view

AA979152
AI519950

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0031769

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0031769

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0031769

FlyExpress - Embryonic expression images (BDGP data)

•

Show all FlyExpress processed images for CG9135

Stage(s) 7-8

Stage(s) 11-12

Stage(s) 13-16

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable

CG9135^f03307

Sterility

Allele

fertile

CG9135^f03307

Phenotype manifest in

Allele

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of CG9135	Class	Mutagen	Stocks	Known lesion
CG9135^KG03571			0	--
CG9135^f03307		piggyBac transposase	2	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG9135	Class	Mutagen	Stocks	Known lesion
CG9135^GD14132		in vitro construct \| RNAi in vitro construct \| regulatory fusion	2	Yes

Aneuploid Aberrations

Useful deficiency

Df(2L)AP1

Useful duplication

Dp(2;2)C619

Disrupted in

Df(2L)Exel8017

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD14132}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{WH}CG9135^f03307

P{SUPor-P}CG9135^KG03571

insertion of mobile activating element

P{EP}EP2273

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 1 )

Molecular Function

CV term

Evidence

References

guanyl-nucleotide exchange factor activity

inferred from sequence or structural similarity with NCBI_gi:4557026

(FlyBase, 1992-)

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG9135 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

60014

Orthologs

Genome-wide drosophilid orthologs

Dana\GF14497

Dere\GG23921

Dgri\GH10796

Dmoj\GI17306

Dper\GL19056

Dpse\GA21568

Dsec\GM18595

Dsim\GD23381

Dvir\GJ15738

Dwil\GK14718

Dyak\GE25855

Curated drosophilid orthologs

Dpse\GA21568

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSANGP00000019374
Anopheles gambiae (Ensembl)
ENSBTAP00000011314
Bos taurus (Ensembl)
ENSCAFP00000023162
Canis familiaris (Ensembl)
ENSCINP00000010718
Ciona intestinalis (Ensembl)
NEWSINFRUP00000128244
Takifugu rubripes (Ensembl)
ENSGALP00000000637
Gallus gallus (Ensembl)
ENSP00000326980
Homo sapiens (Ensembl)
ENSMMUP00000025581
Macaca mulatta (Ensembl)
ENSMODP00000003221
Monodelphis domestica (Ensembl)
ENSRNOP00000008940
Rattus norvegicus (Ensembl)
GSTENP00005898001
Tetraodon nigroviridis (Ensembl)
ENSXETP00000032386
Xenopus tropicalis (Ensembl)
Q7XM19
Oryza sativa (Gramene)
AT1G19880.1
Arabidopsis thaliana (Arabidopsis)
ZDB-CDNA-040425-3160
Danio rerio (Zfin)
ZDB-GENE-040426-2213
Danio rerio (Zfin)
DDB0204848
Dictyostelium discoideum (Dictybase)
MGI:1919784
Mus musculus (Informatics)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 6 )

Szeged

P{EP}EP2273

Harvard

PBac{WH}CG9135^f03307

VDRC

v36090

w¹¹¹⁸; P{GD14132}v36090

v36091

w¹¹¹⁸; P{GD14132}v36091

Bloomington

18638

w¹¹¹⁸; PBac{WH}CG9135^f03307

13796

y¹ w^67c23; P{SUPor-P}KG03571

Genomic Clones ( 1 )

BACR10M11

cDNA Clones ( 44 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones