Gene Dmel\CG17648

Help

Close All Open All

General Information

Symbol

Dmel\CG17648

Species

D. melanogaster

Name

CG17648

Annotation symbol

CG17648

Feature type

protein_coding_gene

FlyBase ID

FBgn0031364

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

22B2-22B2

Sequence location

2L:1,752,349..1,752,851 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG17648 (FBgn0031364). It has the cytological map location 22B2. Its sequence location is 2L:1752349..1752851. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

22B2-22B2

Limits computationally determined from genome sequence between P{lacW}CG17646^k11021 and P{EP}EP366

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG17648 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG17648-RA

FBtr0077887

NM_134776

503

128

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG17648-PA

FBpp0077555

13.6

128

4.38

NP_608620

AAF51338

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VQ43

Maps to

Does NOT map to

Identified with

bs32a03

(Oliver, 2001.8.16)

GH02930

(BDGP Project Members, 2000-, Oliver, 2001.8.16)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

5677

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0031364

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0031364

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0031364

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG17648	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG17648	Class	Mutagen	Stocks	Known lesion
CG17648^GD5073		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Useful deficiency

Df(2L)frtz11

Disrupted in

Df(2L)Exel7007

(Ryder, 2004.4.26)

Df(2L)Exel8005

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD5073}

Insertions

Type of insertions

Name

Expression data

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 0 )

Molecular Function

CV term

Evidence

References

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG17648 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

59595

Orthologs

Genome-wide drosophilid orthologs

Dana\GF14009

Dere\GG24809

Dgri\GH25254

Dmoj\GI17276

Dper\GL19655

Dpse\GA14595

Dsec\GM16833

Dsim\GD23113

Dvir\GJ22821

Dwil\GK14560

Dyak\GE17725

Curated drosophilid orthologs

Dpse\GA14595

Linkouts

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

VDRC

v13370

w¹¹¹⁸; P{GD5073}v13370/TM3

Genomic Clones ( 2 )

cDNA Clones ( 2 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

GH02930

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

bs32a03

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0031364

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0031364

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: CG17648 BcDNA:GH02930 Source for merge of CG17648 BcDNA:GH02930 was a shared cDNA (date:030728).

(FlyBase, 1996-)

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_134776

RefSeq (Proteins)

•

NP_608620

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q9VQ43

Other Crossreferences

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

59595

DEDB - Drosophila exon database: splicing graphs

•

5677

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0031364

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0031364

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0031364

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0031364

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0031364

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0031364

Synonyms & Secondary IDs ( 2 )

Reported As

Symbol Synonym

BcDNA:GH02930

CG17648

Name Synonym

CG17648

Secondary FlyBase IDs

FBgn0063283

References ( 6 )

Research paper

Metaxakis et al., 2005, Genetics 171(2): 571--581: Minos as a genetic and genomic tool in Drosophila melanogaster. [FBrf0190750]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]
Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348).: File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]

FlyBase analysis

FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]

Computer file

BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]