A Database of Drosophila Genes & Genomes

FB2008_06, released July 3, 2008
 

Gene Dmel\CG1826

General Information
SymbolDmel\CG1826SpeciesD. melanogaster
NameCG1826Annotation symbolCG1826
Feature typeprotein_coding_geneFlyBase IDFBgn0030228
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)XRecombination map
Cytogenetic map 9E7-9E8 Sequence locationX:10,662,570..10,665,736 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG1826 (FBgn0030228). It has the cytological map location 9E7-9E8. Its sequence location is X:10662570..10665736. Its molecular function is described as protein binding. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
9E7-9E8  
Limits computationally determined from genome sequence between P{EP}Atg8aEP362&P{EP}CG1826EP1098 and P{EP}sesBEP319&P{EP}ImpEP760  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG1826 for information on other features
detailed view FBtr0071498 FBtr0071497 FBtr0073376 FBtr0112976 FBtr0112975 FBtr0112977 FBpp0071427 FBpp0071426 FBpp0111889 FBpp0073232 FBpp0111890 FBpp0111888 FBti0071810 FBti0024654 FBti0007297 FBti0013216 FBti0054320 FBti0011832 FBti0024700 FBti0013945 FBti0057207 FBti0036273 FBti0056931 FBti0036348
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG1826-RA
FBtr0071497
 NM_132421
  2984
  722
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG1826-PA  
FBpp0071426  
82.0  
722  
5.69  
  NP_572649
  AAF46616
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
BTB/POZ-like (IPR000210)
Galactose-binding like (IPR008979)
BTB/Kelch-associated (IPR011705)
BTB/POZ (IPR013069)
BTB/POZ fold (IPR011333)
Kelch related (IPR013089)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AA201159
 
AA202476
 
AA391729
 
AA392835
 
AA438550
 
AA439156
 
AA540367
 
AA816967
 
AA940946
 
AA949766
 
AA950290
 
AA979605
 
AA990652
 
AE003451
AAF46616
 
AI113839
 
AI134162
 
AI402201
 
AI512030
 
AI515509
 
AI515868
 
AI516199
 
AI520513
 
AI544223
 
AI945109
 
AQ073168
 
AT01183
 
AW941484
 
AY069308
AAL39453
 
BF487112
 
BF487122
 
BF487140
 
BF488236
 
BF489740
 
BF491334
 
BF492775
 
BF492776
 
BF494341
 
BF503670
 
BF505221
 
BF505347
 
BF506593
 
BG634846
 
BG635403
 
BG640812
 
BH900965
 
BI171444
 
BI172071
 
BI172542
 
BI172545
 
BI172945
 
BI230732
 
BI231461
 
BI232373
 
BI366222
 
BI372169
 
BI482203
 
BI485860
 
BI486884
 
BI487219
 
CK657315
 
CK658010
 
CK658794
 
CK659866
 
CK661209
 
CK662164
 
CO190168
 
CO269970
 
CO276671
 
CO278802
 
CO321337
 
CO322271
 
CO331355
 
CO342903
 
EC061002
 
EC071247
 
EC080852
 
EC085988
 
EC086825
 
EC216463
 
EC243545
 
EC244387
 
EC246411
 
EC253649
 
EC259119
 
EL871176
 
GH10319
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (Oliver, 2001.8.16)
    (BDGP Project Members, 2000-)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0071498 FBtr0071497 FBtr0073376 FBtr0112976 FBtr0112975 FBtr0112977
        AI113839
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 4 )
        For All Classical Alleles Show

        Allele of CG1826ClassMutagenStocksKnown lesion
        CG1826EP10981 --
        CG1826G0242a
          		0 Yes
          CG1826GS1030
            		0 Yes
            CG1826KG078591 --
            hide Alleles Carried on Transgenic Constructs ( 1 )
            For All Alleles Carried on Transgenic Constructs Show

            Allele of CG1826ClassMutagenStocksKnown lesion
            CG1826GD95431 Yes
            hide Aneuploid Aberrations
            Useful deficiency
             
            hide Transgenic Constructs & Insertions
            Transgenic Constructs
            Type of construct
            Name
            Expression data
            UAS construct
            P{GD9543}
            NA
            Insertions
            Type of insertions
            Name
            Expression data
            insertion of mobile activating element
            P{EP}CG1826EP1098
            NA
            P{GSV1}CG1826GS1030
            NA
            miscellaneous insertions
            P{SUPor-P}Atg8aKG07569
            NA
            P{SUPor-P}CG1826KG07859
            NA
            insertion of enhancer trap
            P{lacW}CG1826G0242a
            No
            hide Related Comments
            Please look at the allele reports for the complete phenotype data
            hide Gene Ontology: Function, Process & Cellular Component ( 1 )
            hide Molecular Function
            CV term
            Evidence
            References
            protein binding
            inferred from electronic annotation with InterPro:IPR000210, InterPro:IPR011333, InterPro:IPR013069
            (FlyBase Curators et al., 2004-)
            hide Biological Process
            CV term
            Evidence
            References
            hide Cellular Component
            CV term
            Evidence
            References
            hide Sequence Ontology: Class of Gene
            protein_coding_gene
             
            nuclear_gene
             
            hide Interactions & Pathways
            hide Summary of Genetic Interactions
            Interacts with
            Please look at the allele data for full details of the genetic interactions
            CG1826 allele
            Gene
            References
            unspecified
            pbl
            (Gregory et al., 2007)
            hide External Data
            Linkouts
            BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
            •
            Drosophila PIMRider - The Drosophila Protein Interaction map
            •
            hide Orthologs
            Genome-wide drosophilid orthologs
            Curated drosophilid orthologs
             
            Linkouts
            InParanoid orthologs - Eukaryotic orthologs
            •
            hide Functional Complementation between Species
            hide Inter-Species Misexpression Data
            Produces phenotype in
            Produces NO phenotype in
            hide Stocks & Reagents
            hide Stocks Listed in FlyBase ( 4 )
            Szeged
            -
            P{EP}CG1826EP1098
            VDRC
            v33049
            w1118; P{GD9543}v33049/CyO
            Bloomington
            14666
            y1 P{SUPor-P}CG1826KG07859
            14639
            y1 P{SUPor-P}Atg8aKG07569/FM7c
            hide Genomic Clones ( 0 )
            hide cDNA Clones ( 62 )
            cDNA Clones, Fully Sequenced
            BDGP DGC clones
            Other clones
            cDNA Clones, End Sequenced (ESTs)
            BDGP DGC clones
            Other clones
            hide RNAi & Array Information
            Affy Oligo
            Linkouts
            DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
            •
            GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
            •
            hide Antibody Information
            hide Other Information
            hide Discoverer
            hide Etymology
            hide Identification
            hide Position Effect Variegation Data
            hide Relationship to Other Genes
            Source for database identity of
            Source for database merge of
            Additional comments
            hide Comments About Role
            hide Comments About Molecular Function
            hide Other Comments
            hide External Crossreferences & Linkouts
            Sequence Crossreferences
            RefSeq (Transcripts)
            •
            RefSeq (Proteins)
            •
            DDBJ / EMBL / GenBank
            •
            UniProtKB/TrEMBL
            •
            Other Crossreferences
            InterPro domains - A database of protein families, domains, and functional sites
            •
            BTB/POZ-like (IPR000210)
            Galactose-binding like (IPR008979)
            BTB/Kelch-associated (IPR011705)
            BTB/POZ (IPR013069)
            BTB/POZ fold (IPR011333)
            Kelch related (IPR013089)
            Linkouts
            BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
            •
            DEDB - Drosophila exon database: splicing graphs
            •
            DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
            •
            Drosophila PIMRider - The Drosophila Protein Interaction map
            •
            FLIGHT - Cell culture data for RNAi and other high-throughput technologies
            •
            FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
            •
            FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
            •
            GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
            •
            GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
            •
            InParanoid orthologs - Eukaryotic orthologs
            •