A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG11163

General Information
SymbolDmel\CG11163SpeciesD. melanogaster
NameCG11163Annotation symbolCG11163
Feature typeprotein_coding_geneFlyBase IDFBgn0025693
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)2RRecombination map
Cytogenetic map41F10-41F11Sequence location2R:1,662,279..1,670,360 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG11163 (FBgn0025693). It has the cytological map location 41F10-41F11. Its sequence location is 2R:1662279..1670360. Its molecular function is described as zinc ion transmembrane transporter activity. It is involved in the biological process cation transport. 9 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
41F10-41F11  
Limits computationally determined from genome sequence between P{PZ}l(2)0985109851&P{lacW}Src42Ak10108 and P{lacW}l(2)k09848k09848&P{EP}EP407  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG11163 for information on other features
detailed view FBtr0086054 FBtr0086055 FBtr0086053 FBtr0086056 FBpp0085390 FBpp0085391 FBpp0085389 FBpp0085392 FBti0067027 FBti0039964 FBti0056004 FBti0021088 FBti0053915 FBti0020926 FBti0050774 FBti0046207 FBti0029261 FBti0035038
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG11163-RA
FBtr0086053
 NM_136341
  1958
  498
CG11163-RB
FBtr0086054
 NM_165446
  2460
  498
CG11163-RC
FBtr0086055
 NM_165447
  2060
  498
CG11163-RD
FBtr0086056
 NM_165448
  1982
  498
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG11163-PA  
FBpp0085389  
55.0  
498  
5.93  
  NP_610185
  AAF57308
CG11163-PB  
FBpp0085390  
55.0  
498  
5.93  
  NP_724429
  AAM68358
CG11163-PC  
FBpp0085391  
55.0  
498  
5.93  
  NP_724430
  AAM68359
CG11163-PD  
FBpp0085392  
55.0  
498  
5.93  
  NP_724431
  AAM68360
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
Cation efflux protein (IPR002524)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AA141494
 
AA246577
 
AE003785
AAF57308
 
AE003785
AAM68358
 
AE003785
AAM68359
 
AE003785
AAM68360
 
AW941584
 
AY069340
AAL39485
 
AZ300926
 
BH610063
 
BI212303
 
BI212884
 
BI239473
 
BI240319
 
BI361308
 
BI361330
 
BI372663
 
BP548225
 
CK661799
 
CL632187
 
CO176935
 
CO188070
 
CO190961
 
CO281448
 
CO288250
 
CO298877
 
CO314605
 
CO342575
 
CZ471414
 
CZ474861
 
CZ477998
 
CZ481525
 
CZ481526
 
CZ485255
 
CZ485256
 
EC058131
 
EC069234
 
EC070130
 
EC080964
 
EC082772
 
EC087954
 
EC198175
 
EC202923
 
EC217072
 
EC257258
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (Kopczynski et al., 1998)
    (BDGP Project Members, 2000-)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        BDGP expression data
        •
        Show all BDGP original images, annotations and embryonic microarray data for BEST:CK02137
        FlyExpress - Embryonic expression images (BDGP data)
        •
        Show all FlyExpress processed images for CG11163
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        viable
        Sterility
        Allele
        fertile
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 8 )
        For All Classical Alleles Show

        Allele of CG11163ClassMutagenStocksKnown lesion
        CG11163EP20701 --
        CG11163EY093701 --
        CG11163KG003561 --
        CG11163d001541 --
        CG11163d059981 --
        CG11163e000931 --
        CG11163e037720 --
        CG11163f027061 --
        hide Alleles Carried on Transgenic Constructs ( 1 )
        For All Alleles Carried on Transgenic Constructs Show

        Allele of CG11163ClassMutagenStocksKnown lesion
        CG11163GD45221 Yes
        hide Aneuploid Aberrations
        Useful deficiency
         
        Useful duplication
         
        hide Transgenic Constructs & Insertions
        Transgenic Constructs
        Type of construct
        Name
        Expression data
        UAS construct
        P{GD4522}
        NA
        Insertions
        Type of insertions
        Name
        Expression data
        miscellaneous insertions
        PBac{RB}CG11163e00093
        NA
        PBac{RB}CG11163e03772
        NA
        PBac{WH}CG11163f02706
        NA
        P{SUPor-P}CG11163KG00356
        NA
        insertion of mobile activating element
        P{EPgy2}CG11163EY09370
        NA
        P{EP}CG11163EP2070
        NA
        P{XP}CG11163d00154
        NA
        P{XP}CG11163d05998
        NA
        hide Related Comments
        Please look at the allele reports for the complete phenotype data
        hide Gene Ontology: Function, Process & Cellular Component ( 3 )
        hide Molecular Function
        CV term
        Evidence
        References
        zinc ion transmembrane transporter activity
        inferred from sequence or structural similarity with EMBL:AF003747
        (FlyBase, 1992-)
        hide Biological Process
        CV term
        Evidence
        References
        cation transport
        inferred from electronic annotation with InterPro:IPR002524
        (FlyBase Curators et al., 2004-)
        hide Cellular Component
        CV term
        Evidence
        References
        membrane
        inferred from electronic annotation with InterPro:IPR002524
        (FlyBase Curators et al., 2004-)
        hide Sequence Ontology: Class of Gene
        protein_coding_gene
         
        nuclear_gene
         
        hide Interactions & Pathways
        hide Summary of Genetic Interactions
        Interacts with
        Please look at the allele data for full details of the genetic interactions
        CG11163 allele
        Gene
        References
        hide External Data
        Linkouts
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        hide Orthologs
        Genome-wide drosophilid orthologs
        Curated drosophilid orthologs
         
        Linkouts
        InParanoid orthologs - Eukaryotic orthologs
        •
        hide Functional Complementation between Species
        hide Inter-Species Misexpression Data
        Produces phenotype in
        Produces NO phenotype in
        hide Stocks & Reagents
        hide Stocks Listed in FlyBase ( 8 )
        Harvard
        -
        P{XP}CG11163d00154
        -
        P{XP}CG11163d05998
        -
        PBac{RB}CG11163e00093
        -
        PBac{WH}CG11163f02706
        Szeged
        -
        P{EP}CG11163EP2070
        VDRC
        v13311
        w1118; P{GD4522}v13311
        Bloomington
        19952
        y1 w67c23; P{EPgy2}CG11163EY09370
        13098
        y1 w67c23; P{SUPor-P}CG11163KG00356
        hide Genomic Clones ( 1 )
        hide cDNA Clones ( 18 )
        Please Note
        This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
        cDNA Clones, Fully Sequenced
        BDGP DGC clones
        Other clones
        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
        Other clones
        hide RNAi & Array Information
        Affy Oligo
        Linkouts
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        hide Antibody Information
        hide Other Information
        hide Discoverer
        hide Etymology
        hide Identification
        hide Position Effect Variegation Data
        hide Relationship to Other Genes
        Source for database identity of
        Source for database merge of
        Source for merge of: BEST:CK02137 CG11163
        (Bayraktaroglu, 2000.11.2)
        Additional comments
        hide Comments About Role
        hide Comments About Molecular Function
        hide Other Comments
        Identification: cDNA screen for secreted and transmembrane proteins expressed during embryogenesis.
        (Kopczynski et al., 1998)
        hide External Crossreferences & Linkouts
        Sequence Crossreferences
        RefSeq (Transcripts)
        •
        RefSeq (Proteins)
        •
        DDBJ / EMBL / GenBank
        •
        UniProtKB/TrEMBL
        •
        Other Crossreferences
        InterPro domains - A database of protein families, domains, and functional sites
        •
        Cation efflux protein (IPR002524)
        Linkouts
        BDGP expression data
        •
        Show all BDGP original images, annotations and embryonic microarray data for BEST:CK02137
        BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
        •
        DEDB - Drosophila exon database: splicing graphs
        •
        DRSC - RNAi screening (Harvard): high-throughput cell culture data and design
        •
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyExpress - Embryonic expression images (BDGP data)
        •
        FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data
        •
        InParanoid orthologs - Eukaryotic orthologs
        •
        PANTHER - Protein classification by function, families, and pathways
        •
        hide Synonyms & Secondary IDs ( 3 )
        Reported As
        Symbol Synonym
        BEST:CK02137
        (Giot et al., 2003, )
        CG11163
         
        CK02137
        (Kopczynski et al., 1998)
        Name Synonym
        CG11163
         
        Secondary FlyBase IDs
        • FBgn0033040
        hide References ( 12 )
        Research paper
        Corradini et al., 2003, Chromosoma 112(1): 26--37
        FISH analysis of Drosophila melanogaster heterochromatin using BACs and P elements. [FBrf0160459]
        Kopczynski et al., 1998, Proc. Natl. Acad. Sci. USA 95(17): 9973--9978
        A high throughput screen to identify secreted and transmembrane proteins involved in Drosophila embryogenesis. [FBrf0104467]
        Supplementary material
        Giot et al., 2003, Science 302(5651):
        Tables S1 to S7. [FBrf0166452]
        Personal communication to FlyBase
        Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
        RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
        FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
        Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
        Bayraktaroglu, 2000.11.2, Current list of possibly CG-able known genes.
        Current list of possibly CG-able known genes. [FBrf0131225]
        FlyBase analysis
        FlyBase, 1992-, FlyBase curation
        FlyBase curation. [FBrf0105495]
        Computer file
        Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
        Genomic mapping of Exelixis insertion collection. [FBrf0184340]
        Gene Disruption Project members, 2001-, [title not yet available]
        [title not yet available] [FBrf0132177]
        BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
        Berkeley Drosophila Genome Project. [FBrf0125078]
        Automatic genome annotation
        FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]
        [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
        Curated genome annotation
        Ketchum, 1999.11, [Annotations performed at the Celera Jamboreee.]
        [Annotations performed at the Celera Jamboreee.] [FBrf0126677]