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Gene Dmel\yps

General Information
Symbol	Dmel\yps	Species	D. melanogaster
Name	ypsilon schachtel	Annotation symbol	CG5654
Feature type	protein_coding_gene	FlyBase ID	FBgn0022959
Created / Updated	2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	68F4-68F4	Sequence location	3L:12,114,626..12,118,205 [-]
Map ( GBrowse )	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene ypsilon schachtel is referred to in FlyBase by the symbol yps (CG5654, FBgn0022959). It has the cytological map location 68F4. Its sequence location is 3L:12114626..12118205. Its molecular function is described as: nucleic acid binding; mRNA binding; DNA binding. It is involved in the biological processes: oogenesis; regulation of transcription, DNA-dependent. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.
External Summaries
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 68F4-68F4   Limits computationally determined from genome sequence between P{PZ}rols08232&P{lacW}l(3)j2D3j2D3 and P{PZ}l(3)0508805088
Experimentally Determined Cytological Location
Cytogenetic map Notes References 68F3-68F7 (determined by in situ hybridisation)   (Mansfield et al., 2002) 68F3-68F7 (determined by in situ hybridisation)   (Mansfield et al., 2000) 70A-70F   (Thieringer, 1996.2.13) 69-70 (determined by in situ hybridisation)   (Thieringer et al., 1997)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology) References Gene Order (overall orientation not stated) References
Gene Model & Products
Please see the GBrowse view of Dmel\yps for information on other features
Comments on Gene Model
	DGC clone appears problematic: incomplete CDS(GH18372) DGC clone appears problematic: unspliced intron (GH18372)
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) yps-RA FBtr0076027  NM_079309   1859   352
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kD) Length (aa) Theoretical pI RefSeq ID GenBank protein yps-PA   FBpp0075759   38.2   352   10.44     NP_524033   AAF49961
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts	PANTHER - Protein classification by function, families, and pathways • FBgn0022959
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cold-shock protein, DNA-binding (IPR002059) Cold shock protein (IPR011129) Nucleic acid-binding, OB-fold (IPR012340) Nucleic acid-binding, OB-fold-like (IPR016027)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA538785   AA695283   AA735177   AA802074   AA803706   AA816464   AA820529   AA820785   AA948974   AA951020   AA952185   AA952207   AA978753   AA979170   AA979349   AA979400   AA979477   AA990772   AE003542 AAF49961   AI113428   AI238302   AI258059   AI258613   AI259079   AI296065   AI296341   AI297725   AI387736   AI404324   AI405562   AI405943   AI406056   AI456828   AI456923   AI511923   AI514877   AI515024   AI518147   AI519835   AI533868   AI533873   AI544363   AI546501   AI945643   AW940702   AW943389   AY060315 AAL25354   AY061440 AAL28988   BE976299   BF491216   BF499211   BG635247   BG636469   BI161972   BI162531   BI162532   BI162914   BI164237   BI169788   BI172060   BI227789   BI228864   BI230774   BI231713   BI232085   BI232310   BI234053   BI235698   BI235788   BI236013   BI240805   BI242271   BI353681   BI362684   BI363158   BI375291   BI482311   BI486389   BI579815   BI583005   BI583817   BI585393   BI591205   BI591451   BI593153   BI593207   BI605655   BI607572   BI608705   BI613906   BI620483   BI622755   BI628705   BI629898   BI631172   BI633045   BI633320   BI633579   BI633603   BI633741   BI638505   BI639373   BP546853   BP549495   BP554559   BP554560   CK445223   CO177380   CO179265   CO186896   CO187670   CO188803   CO263488   CO267997   CO275186   CO278578   CO278642   CO278714   CO283641   CO286284   CO286335   CO287755   CO289112   CO289163   CO296094   CO297585   CO299976   CO307750   CO309094   CO309795   CO312159   CO313029   CO314967   CO316655   CO316888   CO321523   CO326249   CO329731   CO336734   CZ467010   EC059535   EC061166   EC062248   EC065116   EC066536   EC067159   EC067395   EC072649   EC072674   EC075695   EC076055   EC077584   EC079132   EC081223   EC081626   EC085151   EC085873   EC086848   EC088402   EC196055   EC196111   EC196897   EC204716   EC206411   EC211122   EC213318   EC218843   EC219429   EC219928   EC228085   EC230112   EC231325   EC234324   EC235900   EC236192   EC241003   EC241168   EC249880   EC260085   EC263994   EC264223   EC267011   EL883378   RE01821   U49120 AAB94634
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	O46173 Q95RE4 Q95T63
Maps to
Does NOT map to
Identified with	bs15b05 GH23979 (Oliver, 2001.8.16) GH18372 LD37574 (BDGP Project Members, 2000-)
Mapped Features & Mutations
Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here Type Symbol & Location Additional Notes References
External Data
Linkouts	DEDB - Drosophila exon database: splicing graphs • 4350
Crossreferences
Expression Data
FlyBase-Curated Data
Transcript and Protein data	Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
Summary of Transcript Expression
Stage Tissue/Position Reference
Marker for
Subcellular Localization
CV Term
Summary of Polypeptide Expression
Stage Tissue/Position Reference
Marker for
Subcellular Localization
CV Term
Microarray Data
	Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002) AI518147 AI387736
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0022959 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • FBgn0022959 GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies • FBgn0022959
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable ypsJM2 viable (with Df(3L)BK9) ypsJM2 lethal ypsCA06791 Sterility Allele fertile ypsJM2 female fertile ypsJM2 female fertile (with Df(3L)BK9) ypsJM2 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of yps Class Mutagen Stocks Known lesion ypsCA06791 P-element activity 0 Yes ypsJM2 loss of function P-element activity Δ2-3 0 Yes ypsc01240 piggyBac transposase 1 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show