Gene Dmel\Mst35Ba

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General Information

Symbol

Dmel\Mst35Ba

Species

D. melanogaster

Name

Male-specific-transcript-35Ba

Annotation symbol

CG4479

Feature type

protein_coding_gene

FlyBase ID

FBgn0013300

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

35B6-35B6

Sequence location

2L:14,879,045..14,881,652 [-]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

The gene Male-specific-transcript-35Ba is referred to in FlyBase by the symbol Mst35Ba (CG4479, FBgn0013300). It has the cytological map location 35B6. Its sequence location is 2L:14879045..14881652. Its molecular function is described as DNA binding. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

35B6-35B6

Limits computationally determined from genome sequence between P{EP}elB^EP2039&P{PZ}osp^rJ571 and P{lacW}Su(H)^k07904

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

In direction of increasing cytology: CG15279- Mst35Ba- Mst35Bb-

(Ashburner et al., 1999)

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\Mst35Ba for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Mst35Ba-RA

FBtr0080682

NM_057702

688

146

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Mst35Ba-PA

FBpp0080244

16.9

146

11.31

NP_477050

AAF53418

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0013300

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

High mobility group box, HMG (IPR009071)

Protein of unknown function DUF1074 (IPR010477)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Maps to

DS03431

(Ashburner et al., 1999.10.12)

FBcl0297551

(FlyBase, 1992-)

Does NOT map to

Identified with

AT31403

(BDGP Project Members, 2000-)

(Oliver, 2001.8.16)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

7682

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0013300

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0013300

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0013300

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of Mst35Ba	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Mst35Ba	Mutagen	Known lesion
Mst35Ba^GD17824	in vitro construct \| RNAi in vitro construct \| regulatory fusion	Yes
Mst35Ba^GD4470	in vitro construct \| RNAi in vitro construct \| regulatory fusion	Yes
Mst35Ba^{T:Avic\GFP-EGFP}	in vitro construct \| coding region fusion	Yes

Aneuploid Aberrations

Useful deficiency

Df(2L)A220

Useful duplication

Dp(2;2)GYL

Disrupted in

Df(2L)Exel8033

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD17824}

P{GD4470}

characterization construct

P{protamineA-eGFP}

Insertions

Type of insertions

Name

Expression data

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 2 )

Molecular Function

CV term

Evidence

References

DNA binding

inferred from sequence or structural similarity

(Ashburner et al., 1999)

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

chromatin

inferred from direct assay

(Raja and Renkawitz-Pohl, 2005)

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Mst35Ba allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

60887

Orthologs

Genome-wide drosophilid orthologs

Dwil\GK18077

Curated drosophilid orthologs

Linkouts

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 1 )

BACR33C24

cDNA Clones ( 12 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones