A Database of Drosophila Genes & Genomes

FB2008_06, released July 3, 2008
 

Gene Dmel\Su(H)

General Information
SymbolDmel\Su(H)SpeciesD. melanogaster
NameSuppressor of HairlessAnnotation symbolCG3497
Feature typeprotein_coding_geneFlyBase IDFBgn0004837
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)2LRecombination map2-50.5
Cytogenetic map 35B8-35B8 Sequence location2L:15,039,496..15,043,335 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Suppressor of Hairless is referred to in FlyBase by the symbol Su(H) (CG3497, FBgn0004837). It has the cytological map location 35B8. Its sequence location is 2L:15039496..15043335. Its molecular function is described as: DNA binding; RNA polymerase II transcription factor activity; transcription activator activity; protein binding; transcription repressor activity; specific transcriptional repressor activity; sequence-specific DNA binding; transporter activity; transcription factor activity. It is involved in the biological processes described with 15 unique terms, many of which group under: anatomical structure development; regulation of metabolic process; positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; transcription, DNA-dependent; organ development; transport; cell division; regulation of developmental process; cell communication; cell-cell signaling; sensory organ development; Notch signaling pathway. 83 alleles are reported. The phenotypes of these alleles are annotated with 60 unique terms, many of which group under: adult segment; organ system; peripheral nervous system; nervous system; adult mesothoracic segment; thoracic segment; embryonic nervous system; embryonic neuron; imaginal precursor; late extended germ band embryo. It has one annotated transcript and one annotated polypeptide.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Su(H): Suppressor of Hairless
Homozygous lethal; hemizygotes die in the pupal stage, between head eversion and the beginning of eye pigmentation. Heterozygotes in the absence of H are wild type in phenotype. Suppresses H; Su(H)/+; H/+ have 7-10 more bristles that H/+ alone; besides affecting the bristle phenotype of H, all alleles tend to enhance its wing-vein phenotype of shortening L4 and L5. Su(H) is without effect on the lethal phenotype of homozygous H. One homozygous-lethal allele acts as a dominant enhancer of H. Most alleles are amorphic or hypomorphic; heterozygous deficiencies for the locus also suppress, and duplications enhance H (Nash, 1970). Enhanced genotypes have 10-15 fewer bristles and a far more extreme loss of microchaetae on the thorax than their unenhanced counterparts. The number of bristles in H/+ flies is inversely related to the dose of Su(H)+, with the number of bristles varying from fewer than ten with four doses to approximately 35 with one dose. Some combinations of hypomorphic alleles produce occasional escapers; survivors have distinctive phenotypes, which are described under entries for specific alleles.
Su(H)3
A leaky allele; trans heterozygotes with Su(H)1 show 20% survival; almost viable with Su(H)7; semilethal with Su(H)2, Su(H)4, Su(H)6, and Su(H)8; lethal in combination with Su(H)16. Survivors have vestigial wings and halteres and eyes somewhat reduced and rough; bristles normal.
Su(H)7
Homozygous lethal; in trans heterozygotes with other alleles produces rare escapers, which have an extreme mutant phenotype; wings and halteres similar to those of an extreme vestigial allele; eyes, although large, have rough glazed appearance and the flies are almost achaetous, having fewer than ten macrochaetae per fly; acrostichal hairs and other microchaetae reduced in number and disturbed in arrangement; tarsal claws also much reduced.
Su(H)16
Homozygous lethal; acts as a dominant enhancer of H, with about the same effect as heterozygosity for a duplication for the locus.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
35B8-35B8  
Limits computationally determined from genome sequence between P{EP}elBEP2039&P{PZ}osprJ571 and P{lacW}Su(H)k07904  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
35B8-35B9
(determined by in situ hybridisation)  
35B8-35B9
(determined by in situ hybridisation)  
35B8-35B10
(determined by in situ hybridisation)  
35B8-35B9
(determined by in situ hybridisation)  
35B9-35B10
(determined by in situ hybridisation)  
35B-35C
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
2-50.5
 
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: l(2)35Bg- Su(H)+ ck-
In direction of increasing cytology: Su(H)+ ck- TfIIS- vas+ vig- vas+
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\Su(H) for information on other features
detailed view FBtr0080699 FBtr0080725 FBtr0080700 FBtr0080723 FBtr0080724 FBpp0080260 FBpp0080284 FBpp0080261 FBti0026031 FBti0006536 FBti0036405 FBti0026074 FBti0038755 FBti0014213 FBti0014215 FBti0014214 FBti0006666
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0080700
  2943
  594
Additional Transcript Data & Comments
Reported size (kB)
3.4 (northern blot)
2.9 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0080261  
66.9  
594  
7.02  
Additional Polypeptide Data & Comments
Reported size (kD)
75-80 (kD observed)
550, 485 (aa); 62, 54 (kD predicted)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
TRANSFAC - Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
  • T01615
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
 
 
 
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    point mutation
    pr_change=K138@
    na_change=A15041122T
    point mutation
    pr_change=R266H
    na_change=G15041507A
    point mutation
    pr_change=E305K
    na_change=G15041623A
    rescue fragment
    comment=position of restriction fragment on reference sequence inferred by FlyBase curator
    linked_to=XbaI-EcoRI_rfrag
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
     embryonic stage | early
     adult stage | female
     adult stage | male
     pupal stage | 24hr
     embryonic stage
     embryonic stage | stage >=11
     external sensory organ
     embryonic stage | stage >=11
     embryonic stage | stage >=11
     embryonic stage-adult stage
     larval stage | third instar
     eye-antennal disc
     pupal stage | 16-24 hr
     larval stage | third instar
     ventral thoracic disc
     pupal stage | 24hr
     larval stage | third instar
     dorsal mesothoracic disc
     pupal stage | 16-24hr
     adult muscle system | presumptive
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
       larval stage | third instar
       proneural cluster
       pupal stage
       socket
       pupal stage
       external sensory organ precursor cell IIb
       embryonic stage
       external sensory organ
       larval stage | third instar
       dorsal mesothoracic disc
       embryonic stage
       pupal stage
       external sensory organ precursor cell IIa
       pupal stage
       socket <of> interommatidial bristle
       embryonic stage
       embryonic peripheral nervous system | restricted
       larval stage | third instar
       sensillum precursor
      Marker for
        Subcellular Localization
        CV Term
        nucleus cytoplasm
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0080699 FBtr0080725 FBtr0080700 FBtr0080723 FBtr0080724
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        FlyExpress - Embryonic expression images (BDGP data)
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        Other Phenotypes
        Allele
        Sterility
        Allele
        Phenotype manifest in
        Allele
        mesothoracic tergum & sensory organ cell & pupa | somatic clone
        sensory organ cell & pupa | somatic clone
        embryonic/first instar larval cuticle & embryonic head | germ-line clone
        proneural cluster & dorsal mesothoracic disc
        crystal cell & larva (with Su(H)8)
        lymph gland & larva (with Su(H)8)
        crystal cell & larva (with Su(H)6)
        lymph gland & larva (with Su(H)6)
        eye disc & neuron | somatic clone | cell autonomous