Gene Dmel\Su(H)
| General Information | ||||
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| Symbol | Dmel\Su(H) | Species | D. melanogaster | |
| Name | Suppressor of Hairless | Annotation symbol | CG3497 | |
| Feature type | protein_coding_gene | FlyBase ID | FBgn0004837 | |
| Created / Updated | 2003-12-01/2003-12-01 | |||
| Genomic Location | ||||
| Chromosome (arm) | 2L | Recombination map | 2-50.5 | |
| Cytogenetic map | 35B8-35B8 | Sequence location | 2L:15,039,496..15,043,335 [+] | |
| Map ( GBrowse ) |
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Summary Information
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Automatically generated summary
See sections below for more information | The gene Suppressor of Hairless is referred to in FlyBase by the symbol Su(H) (CG3497, FBgn0004837). It has the cytological map location 35B8. Its sequence location is 2L:15039496..15043335. Its molecular function is described as: DNA binding; RNA polymerase II transcription factor activity; transcription activator activity; protein binding; transcription repressor activity; specific transcriptional repressor activity; sequence-specific DNA binding; transporter activity; transcription factor activity. It is involved in the biological processes described with 15 unique terms, many of which group under: anatomical structure development; regulation of metabolic process; positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; transcription, DNA-dependent; organ development; transport; cell division; regulation of developmental process; cell communication; cell-cell signaling; sensory organ development; Notch signaling pathway. 83 alleles are reported. The phenotypes of these alleles are annotated with 60 unique terms, many of which group under: adult segment; organ system; peripheral nervous system; nervous system; adult mesothoracic segment; thoracic segment; embryonic nervous system; embryonic neuron; imaginal precursor; late extended germ band embryo. It has one annotated transcript and one annotated polypeptide. | |||
| External Summaries | ||||
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
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| Gene/Allele symbols may differ from current usage | Su(H): Suppressor of Hairless
Homozygous lethal; hemizygotes die in the pupal
stage, between head eversion and the beginning of eye pigmentation. Heterozygotes in the absence of H are wild type in
phenotype. Suppresses H; Su(H)/+; H/+ have 7-10 more bristles
that H/+ alone; besides affecting the bristle phenotype of H,
all alleles tend to enhance its wing-vein phenotype of shortening L4 and L5. Su(H) is without effect on the lethal
phenotype of homozygous H. One homozygous-lethal allele acts
as a dominant enhancer of H. Most alleles are amorphic or
hypomorphic; heterozygous deficiencies for the locus also
suppress, and duplications enhance H (Nash, 1970). Enhanced
genotypes have 10-15 fewer bristles and a far more extreme
loss of microchaetae on the thorax than their unenhanced counterparts. The number of bristles in H/+ flies is inversely
related to the dose of Su(H)+, with the number of bristles
varying from fewer than ten with four doses to approximately
35 with one dose. Some combinations of hypomorphic alleles
produce occasional escapers; survivors have distinctive phenotypes, which are described under entries for specific alleles.
Su(H)3
A leaky allele; trans heterozygotes with Su(H)1 show
20% survival; almost viable with Su(H)7; semilethal with
Su(H)2, Su(H)4, Su(H)6, and Su(H)8; lethal in combination with
Su(H)16. Survivors have vestigial wings and halteres and eyes
somewhat reduced and rough; bristles normal.
Su(H)7
Homozygous lethal; in trans heterozygotes with other
alleles produces rare escapers, which have an extreme mutant
phenotype; wings and halteres similar to those of an extreme
vestigial allele; eyes, although large, have rough glazed
appearance and the flies are almost achaetous, having fewer
than ten macrochaetae per fly; acrostichal hairs and other
microchaetae reduced in number and disturbed in arrangement;
tarsal claws also much reduced.
Su(H)16
Homozygous lethal; acts as a dominant enhancer of H,
with about the same effect as heterozygosity for a duplication
for the locus.
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Detailed Mapping Data
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| FlyBase Computed Cytological Location | ||||
Cytogenetic map Evidence for location 35B8-35B8
Limits computationally determined from genome sequence between P{EP}elBEP2039&P{PZ}osprJ571 and P{lacW}Su(H)k07904
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| Experimentally Determined Cytological Location | ||||
Cytogenetic map Notes References 35B8-35B9 (determined by in situ hybridisation)
35B8-35B9 (determined by in situ hybridisation)
35B8-35B10 (determined by in situ hybridisation)
35B8-35B9 (determined by in situ hybridisation)
35B8-35B9 35B9-35B10 (determined by in situ hybridisation)
35B-35C (determined by in situ hybridisation)
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| Experimentally Determined Recombination Data | ||||
| Location | 2-50.5 2-50.8 | |||
| Left of (cM) | ||||
| Right of (cM) | ||||
| Notes | ||||
| Molecular Map Data | ||||
Gene Order (in direction of increasing cytology)
References In direction of increasing cytology: l(2)35Bg- Su(H)+ ck- In direction of increasing cytology: Su(H)+ ck- TfIIS- vas+ vig- vas+ Gene Order (overall orientation not stated) References | ||||
Gene Model & Products
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Please see the
GBrowse view of
Dmel\Su(H)
for information on other features
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| Comments on Gene Model | ||||
Transcript Data
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| Annotated Transcripts | ||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) | ||||
| Additional Transcript Data & Comments | ||||
| Reported size (kB) | 3.4 (northern blot) 2.9 (northern blot) | |||
| Comments | ||||
| External Data | ||||
| Crossreferences | ||||
Polypeptide Data
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| Annotated Polypeptides | ||||
Name FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
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| Additional Polypeptide Data & Comments | ||||
| Reported size (kD) | 75-80 (kD observed) 594 (aa) 550, 485 (aa); 62, 54 (kD predicted) | |||
| Comments | ||||
| External Data | ||||
| Linkouts | PANTHER
- Protein classification by function, families, and pathways
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| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• Lipocalin (IPR002345)
Cell surface receptor IPT/TIG (IPR002909)
p53-like transcription factor, DNA-binding (IPR008967)
Immunoglobulin-like fold (IPR013783)
Immunoglobulin E-set (IPR014756)
Beta-trefoil (IPR015350)
LAG1, DNA binding (IPR015351)
TRANSFAC
- Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
•
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Sequences Consistent with the Gene Model
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| DDBJ
/
EMBL / GenBank | DNA sequence Protein sequence Name | |||
| UniProtKB/Swiss-Prot | ||||
| UniProtKB/TrEMBL | ||||
| Maps to | ||||
| Does NOT map to | ||||
| Identified with | ||||
Mapped Features & Mutations
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Please see
GBrowse
or insertion reports for information on insertions of transgenic
constructs and features not listed here
Type Symbol & Location Additional Notes References point mutation Su(H)[IB115] 2L:15,041,122..15,041,122 pr_change=K138@ na_change=A15041122T point mutation Su(H)[16] 2L:15,041,507..15,041,507 pr_change=R266H na_change=G15041507A point mutation Su(H)[6] 2L:15,041,623..15,041,623 pr_change=E305K na_change=G15041623A rescue fragment Su(H)[+t6.0] 2L:15,038,788..15,045,274 comment=position of restriction fragment on reference sequence inferred by FlyBase curator linked_to=XbaI-EcoRI_rfrag | ||||
External Data
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| Linkouts | DEDB
- Drosophila exon database: splicing graphs
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| Crossreferences | ||||
Expression Data
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| FlyBase-Curated Data | ||||
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Transcript and Protein data | Please see the FlyBase Gene Expression Report for details of gene expression from the literature. | |||
Summary of Transcript Expression
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Stage Tissue/Position
Reference
embryonic stage | early
adult stage | female
adult stage | male
pupal stage | 24hr
tormogen cell
embryonic stage
embryonic stage | stage >=11
external sensory organ
embryonic stage | stage >=11
tormogen cell
embryonic stage | stage >=11
trichogen cell
embryonic stage-adult stage
larval stage | third instar
eye-antennal disc
pupal stage | 16-24 hr
epidermis
larval stage | third instar
ventral thoracic disc
pupal stage | 24hr
trichogen cell
larval stage | third instar
dorsal mesothoracic disc
pupal stage | 16-24hr
adult muscle system | presumptive | ||||
| Marker for | ||||
| Subcellular Localization | ||||
| CV Term | ||||
Summary of Polypeptide Expression
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Stage Tissue/Position
Reference
larval stage | third instar
proneural cluster
pupal stage
socket
pupal stage
external sensory organ precursor cell IIb
embryonic stage
external sensory organ
larval stage | third instar
dorsal mesothoracic disc
embryonic stage
pupal stage
external sensory organ precursor cell IIa
pupal stage
socket <of> interommatidial bristle
embryonic stage
embryonic peripheral nervous system | restricted
larval stage | third instar
sensillum precursor | ||||
| Marker for | ||||
| Subcellular Localization | ||||
| CV Term | nucleus
cytoplasm | |||
Microarray Data
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Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
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External Data & Images
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| Linkouts | FLIGHT
- Cell culture data for RNAi and other high-throughput technologies
FlyAtlas
- Adult expression by tissue, using Affymetrix Dros2 array
GEO (NCBI)
- Gene expression data: microarray and other high-throughput technologies
FlyExpress
- Embryonic expression images (BDGP data)
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Alleles & Phenotypes
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Summary of Allele Phenotypes
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Lethality Allele Other Phenotypes Allele Sterility Allele Phenotype manifest in Allele eye disc & neuron | somatic clone | cell autonomous | ||||


Stage(s)
1-3
Stage(s)
4-6
Stage(s)
7-8
Stage(s)
9-10
Stage(s)
11-12
Stage(s)
13-16