Gene Dmel\porin

General Information
Symbol	Dmel\porin	Species	D. melanogaster
Name	porin	Annotation symbol	CG6647
Feature type	protein_coding_gene	FlyBase ID	FBgn0004363
Created / Updated	2005-09-09/2005-09-09
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	32B1-32B1	Sequence location	2L:10,847,227..10,850,868 [-]
Map ( GBrowse )
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol porin (CG6647, FBgn0004363). It has the cytological map location 32B1. Its sequence location is 2L:10847227..10850868. Its molecular function is described as voltage-gated anion channel activity. It is involved in the biological processes: mitochondrial transport; ion transport; anion transport. 17 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 32B1-32B1 Limits computationally determined from genome sequence between P{PZ}dbf¹ and P{lacW}SCAR^k03107
Experimentally Determined Cytological Location
Cytogenetic map Notes References 32B-32B (Vito, 1997.7.29) 32B-32B (Mesilaty-Gross, 1999.1.20) 32B1-32B2 (determined by in situ hybridisation) (Spradling et al., 1999) 32B3-32B4 (determined by in situ hybridisation) (Caggese et al., 1999) 32B3-32B4 (determined by in situ hybridisation) (Oliva et al., 1998) 32B-32B (determined by in situ hybridisation) (Ryerse et al., 1997) 79D-79D (determined by in situ hybridisation) (Messina et al., 1996) 32B1-32B2 32B1--3 (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology) References In direction of increasing cytology: Stam- ial+ Dnz1+ porin+ (Mesilaty-Gross et al., 1999) Gene Order (overall orientation not stated) References Overall orientation not stated: Stam- ial+ Dnz1+ porin+ (Mesilaty-Gross, 1999.1.20)
Gene Model & Products
Please see the GBrowse view of Dmel\porin for information on other features
Comments on Gene Model
	DGC clone appears problematic: unspliced intron (GH11331) DGC clone GH11331 may retain unspliced intron in 5' UTR; no effect upon predicted CDS.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) porin-RA FBtr0080182 NM_057465 1605 282 porin-RB FBtr0080183 NM_134283 1614 282 porin-RC FBtr0100584 NM_001038810 3297 282
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kD) Length (aa) Theoretical pI RefSeq ID GenBank protein porin-PA FBpp0079771 30.5 282 6.97 NP_476813 AAF53022 porin-PB FBpp0079772 30.5 282 6.97 NP_599110 AAN10766 porin-PC FBpp0100039 30.5 282 6.97 NP_001033899 ABC65894
Additional Polypeptide Data & Comments
Reported size (kD)	282 (aa) (Caggese et al., 1999)
Comments
External Data
Linkouts	PANTHER - Protein classification by function, families, and pathways • FBgn0004363
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Porin, eukaryotic type (IPR001925) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME06647
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246344 AA390359 AA438418 AA438956 AA538775 AA540978 AA696478 AA696775 AA735594 AA735967 AA802324 AA802335 AA803575 AA803665 AA816531 AA820769 AA821145 AA950188 AA950352 AA950986 AA950990 AA951647 AC007186 AE003630 AAF53022 AE003630 AAN10766 AI062309 AI063002 AI064301 AI107717 AI107923 AI107958 AI109404 AI109406 AI114339 AI134001 AI134337 AI134347 AI134383 AI134703 AI135007 AI257563 AI257970 AI259386 AI259965 AI261034 AI292627 AI293031 AI294043 AI386538 AI386591 AI386671 AI386779 AI388004 AI388303 AI404099 AI404900 AI405184 AI405677 AI405867 AI456550 AI513344 AI514474 AI516549 AI516732 AI518978 AI519258 AI519865 AI519978 AI532249 AI534454 AI541763 AI543533 AI546258 AI946440 AJ000880 CAA04370 AQ034146 AW940403 AX664482 AY070509 AAL47980 BE975931 BE976086 BE978457 BF487845 BF488816 BF496796 BF496834 BF500821 BF501625 BG632265 BG635437 BG635465 BG635877 BG636007 BG636595 BG637402 BG637489 BG640292 BG640335 BG640884 BG640948 BG641252 BG641456 BI162139 BI162334 BI162335 BI162348 BI162760 BI168026 BI168389 BI171241 BI171263 BI171374 BI172360 BI172594 BI173811 BI213342 BI213344 BI213573 BI215323 BI216175 BI227534 BI227585 BI228017 BI228407 BI230100 BI230185 BI230397 BI230927 BI232766 BI233080 BI233206 BI234525 BI236052 BI238985 BI240038 BI241730 BI241750 BI242291 BI242466 BI242829 BI351960 BI352080 BI352120 BI352404 BI353181 BI353282 BI353454 BI353860 BI354865 BI355115 BI356074 BI357545 BI361323 BI362496 BI362530 BI364501 BI364524 BI364544 BI364744 BI365273 BI367181 BI367200 BI367658 BI370427 BI371008 BI371451 BI373121 BI375087 BI482787 BI483133 BI483492 BI483972 BI486176 BI486708 BI486961 BI564255 BI565830 BI566058 BI566840 BI568202 BI568288 BI572341 BI573443 BI573444 BI574285 BI575628 BI578013 BI578689 BI580310 BI583569 BI584460 BI584727 BI584961 BI585933 BI588591 BI592931 BI606486 BI607240 BI609945 BI612090 BI613727 BI613928 BI615499 BI615687 BI616544 BI616856 BI617009 BI618818 BI620632 BI620713 BI621131 BI622677 BI623337 BI623834 BI624352 BI624582