Gene Dmel\ct
| General Information | ||||
|---|---|---|---|---|
| Symbol | Dmel\ct | Species | D. melanogaster | |
| Name | cut | Annotation symbol | CG11387 | |
| Feature type | protein_coding_gene | FlyBase ID | FBgn0004198 | |
| Created / Updated | 2003-12-01/2003-12-01 | |||
| Genomic Location | ||||
| Chromosome (arm) | X | Recombination map | 1-20.0 | |
| Cytogenetic map | 7B4-7B6 | Sequence location | X:7,503,181..7,570,056 [+] | |
| Map ( GBrowse ) |
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Summary Information
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Automatically generated summary
See sections below for more information | The gene cut is referred to in FlyBase by the symbol ct (CG11387, FBgn0004198). It has the cytological map location 7B4-7B6. Its sequence location is X:7503181..7570056. Its molecular function is described as: DNA binding; specific RNA polymerase II transcription factor activity; sequence-specific DNA binding; transcription factor activity. It is involved in the biological processes described with 21 unique terms, many of which group under: anatomical structure development; organ morphogenesis; gamete generation; ovarian follicle cell development; antennal development; sensory organ development; open tracheal system development; regulation of biological process; sexual reproduction; immune response; cell cycle; regulation of metabolic process; sensory perception of mechanical stimulus; negative regulation of Notch signaling pathway. 319 alleles are reported. The phenotypes of these alleles are annotated with 57 unique terms, many of which group under: peripheral nervous system; adult segment; nervous system; adult mesothoracic segment; spiracle; organ system; spiracular plate; appendage segment; germarium; larval abdominal segment 5; dorsal thoracic disc; antennal segment. It has 3 annotated transcripts and 3 annotated polypeptides. | |||
| External Summaries | ||||
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
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| Gene/Allele symbols may differ from current usage | ct: cut
ct mutations fall into three nonoverlapping phenotypic classes: kinked femur, cut wings, and lethal. Kinked-
femur mutants are small with slightly dark, dull, red eye
color; femurs kinked; wings seldom expand following eclosion,
or when they do expand they are opaque and abnormal in shape;
flies seem unable to move normally and die on the food soon
after eclosion. Cut-wing mutants variably affect wing shape
and head capsule development; phenotypic effects include
incised wing margins with the tips usually cut to points,
missing or ventrally displaced vibrissae, deformed antennae,
e.g., flattened and embedded with aristae concave forward,
smaller kidney-shaped eyes, warped abdominal bands, and fine
bristles. Most lethal alleles survive as clones of homozygous
epidermal cells (Demerec). Developmental study of ct6 by Waddington [1939, Proc. Nat. Acad. Sci. USA 25: 299-308; 1940,
J. Genet. 41: 75-139 (fig.)] shows wing bud narrower than
wild type as early as just after eversion of wing in early
pupa. Cell death observed in prepupal wing bud (D. Fristrom,
1969, Mol. Gen. Genet. 103: 363-79). Clones of ct6 cells in
internal areas of wing blade normal in size; marginal clones
much reduced in size indicating cell death. Homozygous clones
in either dorsal or ventral membrane must reach margin in
order to produce incision, 100/127 marginal clones unassociated with gaps; when gaps are produced, they affect both wing
surfaces even though clone confined to a single surface. Both
dorsal and ventral chaetal elements at the edges of such gaps
may show the markers of such clones (Santamaria and Garc'a-Bellido, 1975, Wilhelm Roux's Arch. Entwicklungsmech. Org.
178: 233-45). Lethal alleles fall into three groups, based on
their complementation characteristics: cutless, group I, and
group II. Lethal alleles ctC145, ctJA124, and ctl49 exhibit
polyphasic lethality from late embryo to pharate adult (Johnson and Judd, 1979). Lethal embryos characterized by posterior
defects in spiracles; no Keilin's organs, and abnormal maxillary complex (Wieschaus, Nusslein-Volhard, and Jurgens, 1984,
Wilhelm Roux's Arch. Dev. Biol. 193: 296-307). Group II and
to a slightly lesser degree group I lethals fail to differentiate external sensory neurons in the peripheral nervous system; the presumptive external sensory neurons of the embryonic
peripheral nervous system and their support cells are
transformed into chordotonal neurons with their support cells;
the transformed organs are chordotonal both in morphology and
antigenic specificity. Same effect seen in the adult sensory
organs in mosaics; embryonic effect differs from that seen in
adults in that embryos lack peripheral sensory structures,
e.g., Keilin's organs, whereas such structures persist, though
reduced in size, in adult tissue. The numbers and positions
of peripheral neurons is normal. CNS structure and function
appear normal. No discernable effect of absence of ct function in the maternal germ line. Effect of ct mutations on PNS
differentiation cell autonomous. [Bodmer, Barbel, Sheperd,
Jack, Jan, and Jan, 1987, Cell 51: 293-307 (fig.).] Antibodies to ct protein specifically bind to nuclei of presumptive
external sensory organ cells including those of the antennamaxillary organ and external sensory organs in spiracles,
but not to nuclei of chordotonal organs; antibody staining
also seen in some neurons with multiple dendritic
arborizations and in cells lining the Malpighian tubules
(Blochlinger, Bodmer, Jack, Jan, and Jan, 1988, Nature
333: 629-35).
Kinked-femur, cut-wing, and cutless alleles are mutually
complementing: group I lethals complement kinked-femur but
not cut-wing alleles; and group II lethals are noncomplementing; all combinations of lethal alleles are lethal. The different phenotypic classes of alleles occupy discrete and
separate regions of the complex, with the order from left to
right being, kinked femur, cut wing, group I lethals, and
group II lethals; cutless alleles have not been mapped.
Kinked femur, cut, and group-I-lethal mutations are associated
with chromosome aberrations or insertions of transposable elements, whereas group II lethals appear to be point mutations.
ct6, ct68E (= ct67s?), ct78a, and ctK suppressed by su(Hw)2;
dvr2 enhances ct6 and inhibits its complete suppression by
su(Hw)2; su(Hw)2/+ shows slight dominant suppression of wing
phenotype of ctK (Lee, 1973, Aust. J. Biol. Sci. 26: 903-09).
ct6 and ctK strongly enhanced by su(s); su(s) ctK lethal
(Johnson) but rescued by su(Hw)2/+ (Craymer). ct6 the most
commonly used allele.
ct
kf2 ctnct6 ctK lethals
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| | | | |
| -0.04- | -0.16- | - ~0.07- |
Genetic fine structure map of the cut locus
ct71g ctJC20 ctk
Classified as a group-I lethal because homozygotes
show reduced viability, and only 10% of fewer heterozygotes
with other lethal alleles survive; survivors have weakly cut
wings, as well as fine bristles, and enlarged and deformed
humeral callus, not seen in other cut-wing mutants.
ctcl: cut-cutless
Acts as a lethal allele in combination with deficiencies for ct; phenotype normal in combination with viable
ct alleles. Homozygotes have reduced viability and show
thoracic protuberances (Schalet). Heterozygotes of ctcl with
lethal alleles of ct die or eclose in small numbers; an exception is ctcl/ctHA46, which exhibits normal survival.
ctlS1 (A. Schalet)
Lethal; a member of cut Lethal II group, maps proximal to ctC145 (Jack, 1985). Not suppressed by su(Hw)2
(Schalet). ctlS1/+ males, frequently show thoracic protuberances (Schalet).
ctlS2 (A. Schalet)
Almost complete lethal; survival less than 1%. Not
suppressed by su(Hw)2; cut-cutless type of mutant in that
ctlS2 fails to complement lethal alleles, e.g. ctlS1, but complements kf2, ct6 and ctS. Rare surviving males and females
are fertile with normal wings, but usually show thoracic protuberances in the region of the presutural and notoplural
bristles as are also seen in heterozygotes of ctlS1, Df(1)ctJ4
or Df(1)ctJ6.
kf2 | |||
Detailed Mapping Data
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| FlyBase Computed Cytological Location | ||||
Cytogenetic map Evidence for location 7B4-7B6
Limits computationally determined from genome sequence between P{EP}CBPEP1643&P{EP}EP1523EP1523 and P{EP}CHES-1-likeEP1453
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| Experimentally Determined Cytological Location | ||||
Cytogenetic map Notes References 7B1-7B2 7B3-7B4 (determined by in situ hybridisation)
7B-7B (determined by in situ hybridisation)
7B1-7B2 (determined by in situ hybridisation)
7B3-7B3 (determined by in situ hybridisation)
7B-7B (determined by in situ hybridisation)
7B1-7B4 (determined by in situ hybridisation)
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| Experimentally Determined Recombination Data | ||||
| Location | 1-20.0 1-20.2 | |||
| Left of (cM) | ||||
| Right of (cM) | ||||
| Notes | The interval between ct and cm or ct and sn is that between ct6 and either cm or sn. ctkf-2 (the most distal locus in this study) maps 0.04 units to the left of ct6. ctn maps 0.007 units to the left of ct6, and ctK maps 0.16 units to the right of ct6. The lethal ct alleles used in this study map as a cluster approximately 0.07 units to the right of ctK. | |||
| Molecular Map Data | ||||
Gene Order (in direction of increasing cytology)
References Gene Order (overall orientation not stated) References | ||||
Gene Model & Products
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Please see the
GBrowse view of
Dmel\ct
for information on other features
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| Comments on Gene Model | ||||
Transcript Data
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| Annotated Transcripts | ||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) FBtr0114613
8826
2383 | ||||
| Additional Transcript Data & Comments | ||||
| Reported size (kB) | 8.2 (compiled cDNA) | |||
| Comments | Fragments of the 8.2 kb sequence hybridize to at least
two transcripts of 8.5 and 9.5 kb on Northern blots of early and late
embryos. A 2175 amino acid protein is predicted from the 8.2 kb sequence. | |||
| External Data | ||||
| Crossreferences | ||||
Polypeptide Data
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| Annotated Polypeptides | ||||
Name FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0113105
256.6
2383
5.17
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| Additional Polypeptide Data & Comments | ||||
| Reported size (kD) | 2175 (aa); 240 (kD predicted) 320, 280 (kD observed) 320, 280 (kD) | |||
| Comments | g1345461 contains only the homeodomain. When the complete ct coding sequence is
expressed under the control of a heat shock promoter, 320 kD and 280 kD
bands are observed on a Western blot. The same two protein sizes are
detected in Western blots of wild type embryos. ct protein positively regulates its own expression. | |||
| External Data | ||||
| Linkouts | PANTHER
- Protein classification by function, families, and pathways
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| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• Homeobox (IPR001356)
Pollen allergen Poa pIX/Phl pVI, C-terminal (IPR001778)
Homeodomain protein CUT (IPR003350)
Homeodomain-like (IPR009057)
TRANSFAC
- Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
•
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Sequences Consistent with the Gene Model
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| DDBJ
/
EMBL / GenBank | DNA sequence Protein sequence Name | |||
| UniProtKB/Swiss-Prot | ||||
| UniProtKB/TrEMBL | ||||
| Maps to | ||||
| Does NOT map to | ||||
| Identified with | ||||
Mapped Features & Mutations
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Please see
GBrowse
or insertion reports for information on insertions of transgenic
constructs and features not listed here
Type Symbol & Location Additional Notes References protein binding site ct-protein_bind-1 X:7,424,494..7,424,520 bound_moiety=sd-XP evidence=experimental protein binding site ct-protein_bind-2 X:7,424,594..7,424,610 bound_moiety=sd-XP evidence=experimental protein binding site ct-protein_bind-3 X:7,424,390..7,424,403 bound_moiety=sd-XP evidence=experimental protein binding site ct-protein_bind-4 X:7,424,473..7,424,487 bound_moiety=sd-XP evidence=experimental protein binding site ct-protein_bind-5 X:7,424,692..7,424,701 bound_moiety=sd-XP evidence=experimental protein binding site ct-protein_bind-6 X:7,424,821..7,424,843 bound_moiety=sd-XP evidence=experimental protein binding site ct-protein_bind-7 X:7,424,422..7,424,433 bound_moiety=sd-XP evidence=experimental | ||||
External Data
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| Linkouts | ||||
| Crossreferences | ||||
Expression Data
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| FlyBase-Curated Data | ||||
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Transcript and Protein data | Please see the FlyBase Gene Expression Report for details of gene expression from the literature. | |||
Summary of Transcript Expression
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Stage Tissue/Position
Reference
embryonic stage | >5-6 hr
embryonic/larval posterior spiracle | surrounding
pupal stage
pupal stage
pupal stage | ||||
