Gene Dmel\Pcl
| General Information | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Symbol | Dmel\Pcl | Species | D. melanogaster | ||||||||||||||||||||
| Name | Polycomblike | Annotation symbol | CG5109 | ||||||||||||||||||||
| Feature type | protein_coding_gene | FlyBase ID | FBgn0003044 | ||||||||||||||||||||
| Created / Updated | 2003-12-01/2003-12-01 | ||||||||||||||||||||||
| Genomic Location | |||||||||||||||||||||||
| Chromosome (arm) | 2R | Recombination map | 2-84 | ||||||||||||||||||||
| Cytogenetic map | 55B8-55B8 | Sequence location | 2R:14,022,934..14,026,965 [+] | ||||||||||||||||||||
| Map ( GBrowse ) |
| ||||||||||||||||||||||
Summary Information
| |||||||||||||||||||||||
|
Automatically generated summary
See sections below for more information | The gene Polycomblike is referred to in FlyBase by the symbol Pcl (CG5109, FBgn0003044). It has the cytological map location 55B8. Its sequence location is 2R:14022934..14026965. Its molecular function is described as: DNA binding; transcription factor activity; protein binding; zinc ion binding. It is involved in the biological processes: chromatin modification; negative regulation of transcription, DNA-dependent. 33 alleles are reported. The phenotypes of these alleles are annotated with 47 unique terms, many of which group under: adult segment; embryonic abdomen; larval abdominal segment; embryonic segment; adult; thoracic segment; embryonic tagma; abdominal segment 7; appendage segment; adult mesothoracic segment. It has one annotated transcript and one annotated polypeptide. | ||||||||||||||||||||||
| External Summaries | |||||||||||||||||||||||
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
| |||||||||||||||||||||||
| Gene/Allele symbols may differ from current usage | Pcl: Polycomblike
Pcl+, like Pc+, may be considered a negative regulator of the BXC and the ANTC. Strong Pcl mutant alleles (Pcl1,
Pcl2) are homozygous lethal, hemizygous lethal, and lethal
with each other, the embryos having partial posteriorly-directed transformations of the abdominal segments (segment 1
into segment 2 and segments 2-7 into more posterior segments).
These mutants are strong enhancers of Pc3, showing Pc-like
transformations in embryos, and are indistinguishable from Pcl
deficiencies in complementation behavior. Extreme
posteriorly-directed segmental transformations are found in
Pcl1/Df(2R)Pcl11B;Pc3/Pc3 lethal embryos (Duncan, 1982); these
embryos are considerably more abnormal than the Pc3 homozygotes that are Pcl+. Pcl/Pcl embryos that are also homozygous
for Asx, Psc, or Scm show strong posteriorly-directed
transformations of the entire body pattern; the triple mutant
Psc Asx Pcl has a tandem array of posterior abdominal segments
including four abdominal denticle bands in the head region
(Jurgens, 1985). Pcl1/Pcl1 clones in the second through the
sixth abdominal tergites also show caudal transformations;
similar clones in the wing often appear to be partially
transformed into haltere tissue.
Weak Pcl alleles (Pcl3, Pcl4) survive, at least through
eclosion, either as homozygotes or as heterozygotes with
strong or weak Pcl alleles (Duncan, 1982). Pcl1/Pcl3 and
Pcl1/Pcl4 show segmental transformations characteristic of
Pc/+ flies, i.e. antenna to leg, second and third leg to first
leg, wing to haltere, and posteriorly-directed abdominal
transformations (the most frequent abnormality). Increasing
the dosage of the BXC in Pcl1/Pcl4 heterozygotes suppresses
the posteriorly-directed transformations, but enhances the
transformations from leg2 and leg3 to leg1; increasing the
dosage of the ANTC enhances both types of transformations
(Duncan, 1982). Pcl1/Pcl3 females, which die before or soon
after eclosion, show a conversion of parovaria to spermathecae. Both strong and weak Pcl alleles are viable as heterozygotes (Pcl/+) and may show partial abdominal and leg transformations, the abnormalities increasing in Pcl/+;Pc/+ flies or
when Pcl/+ is combined with E(Pc).
| ||||||||||||||||||||||
Detailed Mapping Data
| |||||||||||||||||||||||
| FlyBase Computed Cytological Location | |||||||||||||||||||||||
Cytogenetic map Evidence for location 55B8-55B8
Limits computationally determined from genome sequence between P{PZ}Hsf03091&P{EP}Dgp-1EP731 and P{PZ}sbb04525&P{EP}EP1081EP1081
| |||||||||||||||||||||||
| Experimentally Determined Cytological Location | |||||||||||||||||||||||
Cytogenetic map Notes References 55A-55A 55B5-55B6 (determined by in situ hybridisation)
55B4-55B6 55B5--6
55B-55C Location from complementation analysis with deficiency and duplication chromosomes (details unspecified).
| |||||||||||||||||||||||
| Experimentally Determined Recombination Data | |||||||||||||||||||||||
| Location | 2-83 | ||||||||||||||||||||||
| Left of (cM) | |||||||||||||||||||||||
| Right of (cM) | |||||||||||||||||||||||
| Notes | |||||||||||||||||||||||
| Molecular Map Data | |||||||||||||||||||||||
Gene Order (in direction of increasing cytology)
References In direction of increasing cytology: stau- Hsf- Pcl+ Gene Order (overall orientation not stated) References | |||||||||||||||||||||||
Gene Model & Products
| |||||||||||||||||||||||
Please see the
GBrowse view of
Dmel\Pcl
for information on other features
| |||||||||||||||||||||||
| Comments on Gene Model | |||||||||||||||||||||||
Transcript Data
| |||||||||||||||||||||||
| Annotated Transcripts | |||||||||||||||||||||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) | |||||||||||||||||||||||
| Additional Transcript Data & Comments | |||||||||||||||||||||||
| Reported size (kB) | 3.9 (northern blot) | ||||||||||||||||||||||
| Comments | |||||||||||||||||||||||
| External Data | |||||||||||||||||||||||
| Crossreferences | |||||||||||||||||||||||
Polypeptide Data
| |||||||||||||||||||||||
| Annotated Polypeptides | |||||||||||||||||||||||
Name FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
| |||||||||||||||||||||||
| Additional Polypeptide Data & Comments | |||||||||||||||||||||||
| Reported size (kD) | 857 (aa) | ||||||||||||||||||||||
| Comments | |||||||||||||||||||||||
| External Data | |||||||||||||||||||||||
| Linkouts | PANTHER
- Protein classification by function, families, and pathways
| ||||||||||||||||||||||
| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type (IPR001965)
Tudor (IPR002999)
Zinc finger, FYVE/PHD-type (IPR011011)
| ||||||||||||||||||||||
Sequences Consistent with the Gene Model
| |||||||||||||||||||||||
| DDBJ
/
EMBL / GenBank | DNA sequence Protein sequence Name | ||||||||||||||||||||||
| UniProtKB/Swiss-Prot | |||||||||||||||||||||||
| UniProtKB/TrEMBL | |||||||||||||||||||||||
| Maps to | |||||||||||||||||||||||
| Does NOT map to | |||||||||||||||||||||||
| Identified with | |||||||||||||||||||||||
Mapped Features & Mutations
| |||||||||||||||||||||||
Please see
GBrowse
or insertion reports for information on insertions of transgenic
constructs and features not listed here
Type Symbol & Location Additional Notes References | |||||||||||||||||||||||
External Data
| |||||||||||||||||||||||
| Linkouts | DEDB
- Drosophila exon database: splicing graphs
| ||||||||||||||||||||||
| Crossreferences | |||||||||||||||||||||||
Expression Data
| |||||||||||||||||||||||
| FlyBase-Curated Data | |||||||||||||||||||||||
|
Transcript and Protein data | Please see the FlyBase Gene Expression Report for details of gene expression from the literature. | ||||||||||||||||||||||
Summary of Transcript Expression
| |||||||||||||||||||||||
Stage Tissue/Position
Reference
embryonic stage | |||||||||||||||||||||||
| Marker for | |||||||||||||||||||||||
| Subcellular Localization | |||||||||||||||||||||||
| CV Term | |||||||||||||||||||||||
Summary of Polypeptide Expression
| |||||||||||||||||||||||
Stage Tissue/Position
Reference
larval stage
polytene chromosome | |||||||||||||||||||||||
| Marker for | |||||||||||||||||||||||
| Subcellular Localization | |||||||||||||||||||||||
| CV Term | nucleus | ||||||||||||||||||||||
Microarray Data
|
|||||||||||||||||||||||
|
Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
| |||||||||||||||||||||||
External Data & Images
| |||||||||||||||||||||||
| Linkouts | FLIGHT
- Cell culture data for RNAi and other high-throughput technologies
FlyAtlas
- Adult expression by tissue, using Affymetrix Dros2 array
GEO (NCBI)
- Gene expression data: microarray and other high-throughput technologies
FlyExpress
- Embryonic expression images (BDGP data)
| ||||||||||||||||||||||
Alleles & Phenotypes
| |||||||||||||||||||||||
Summary of Allele Phenotypes
| |||||||||||||||||||||||
Lethality Allele Other Phenotypes Allele Phenotype manifest in Allele mesothoracic leg (with Pcl4) mesothoracic leg & sex comb | ectopic mesothoracic leg (with Pcl1) | |||||||||||||||||||||||
Classical Alleles
( 30 ) | |||||||||||||||||||||||
| For All Classical Alleles Show | |||||||||||||||||||||||
| |||||||||||||||||||||||



Stage(s)
1-3
Stage(s)
4-6
Stage(s)
7-8
Stage(s)
11-12
Stage(s)
13-16