A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\Pcl

General Information
SymbolDmel\PclSpeciesD. melanogaster
NamePolycomblikeAnnotation symbolCG5109
Feature typeprotein_coding_geneFlyBase IDFBgn0003044
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)2RRecombination map2-84
Cytogenetic map55B8-55B8Sequence location2R:14,022,934..14,026,965 [+]
Map ( GBrowse ) detailed view
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Automatically generated summary

See sections below for more information
The gene Polycomblike is referred to in FlyBase by the symbol Pcl (CG5109, FBgn0003044). It has the cytological map location 55B8. Its sequence location is 2R:14022934..14026965. Its molecular function is described as: DNA binding; transcription factor activity; protein binding; zinc ion binding. It is involved in the biological processes: chromatin modification; negative regulation of transcription, DNA-dependent. 33 alleles are reported. The phenotypes of these alleles are annotated with 47 unique terms, many of which group under: adult segment; embryonic abdomen; larval abdominal segment; embryonic segment; adult; thoracic segment; embryonic tagma; abdominal segment 7; appendage segment; adult mesothoracic segment. It has one annotated transcript and one annotated polypeptide.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Pcl: Polycomblike
Pcl+, like Pc+, may be considered a negative regulator of the BXC and the ANTC. Strong Pcl mutant alleles (Pcl1, Pcl2) are homozygous lethal, hemizygous lethal, and lethal with each other, the embryos having partial posteriorly-directed transformations of the abdominal segments (segment 1 into segment 2 and segments 2-7 into more posterior segments). These mutants are strong enhancers of Pc3, showing Pc-like transformations in embryos, and are indistinguishable from Pcl deficiencies in complementation behavior. Extreme posteriorly-directed segmental transformations are found in Pcl1/Df(2R)Pcl11B;Pc3/Pc3 lethal embryos (Duncan, 1982); these embryos are considerably more abnormal than the Pc3 homozygotes that are Pcl+. Pcl/Pcl embryos that are also homozygous for Asx, Psc, or Scm show strong posteriorly-directed transformations of the entire body pattern; the triple mutant Psc Asx Pcl has a tandem array of posterior abdominal segments including four abdominal denticle bands in the head region (Jurgens, 1985). Pcl1/Pcl1 clones in the second through the sixth abdominal tergites also show caudal transformations; similar clones in the wing often appear to be partially transformed into haltere tissue. Weak Pcl alleles (Pcl3, Pcl4) survive, at least through eclosion, either as homozygotes or as heterozygotes with strong or weak Pcl alleles (Duncan, 1982). Pcl1/Pcl3 and Pcl1/Pcl4 show segmental transformations characteristic of Pc/+ flies, i.e. antenna to leg, second and third leg to first leg, wing to haltere, and posteriorly-directed abdominal transformations (the most frequent abnormality). Increasing the dosage of the BXC in Pcl1/Pcl4 heterozygotes suppresses the posteriorly-directed transformations, but enhances the transformations from leg2 and leg3 to leg1; increasing the dosage of the ANTC enhances both types of transformations (Duncan, 1982). Pcl1/Pcl3 females, which die before or soon after eclosion, show a conversion of parovaria to spermathecae. Both strong and weak Pcl alleles are viable as heterozygotes (Pcl/+) and may show partial abdominal and leg transformations, the abnormalities increasing in Pcl/+;Pc/+ flies or when Pcl/+ is combined with E(Pc).
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
55B8-55B8  
Limits computationally determined from genome sequence between P{PZ}Hsf03091&P{EP}Dgp-1EP731 and P{PZ}sbb04525&P{EP}EP1081EP1081  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
55A-55A
55B5-55B6
(determined by in situ hybridisation)  
55B4-55B6
55B-55C
Location from complementation analysis with deficiency and duplication chromosomes (details unspecified).  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: stau- Hsf- Pcl+
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\Pcl for information on other features
detailed view FBtr0110966 FBtr0110965 FBtr0110964 FBtr0086782 FBtr0086735 FBtr0086736 FBtr0086737 FBtr0086743 FBtr0086738 FBtr0086739 FBtr0086740 FBtr0086741 FBtr0086742 FBpp0110266 FBpp0110264 FBpp0110265 FBpp0085961 FBpp0085914 FBti0005230 FBti0072639 FBti0051077 FBti0003305 FBti0066447 FBti0066342 FBti0039888 FBti0005368 FBti0026235 FBti0069648 FBti0057651 FBti0030301 FBti0006528
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0086735
  3851
  1043
Additional Transcript Data & Comments
Reported size (kB)
3.9 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Pcl-PA  
FBpp0085914  
114.6  
1043  
9.08  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
     embryonic stage
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
       larval stage
       polytene chromosome
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0110966 FBtr0110965 FBtr0110964 FBtr0086782 FBtr0086735 FBtr0086736 FBtr0086737 FBtr0086743 FBtr0086738 FBtr0086739 FBtr0086740 FBtr0086741 FBtr0086742
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        FlyExpress - Embryonic expression images (BDGP data)
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        Other Phenotypes
        Allele
        Phenotype manifest in
        Allele
        mesothoracic leg & sex comb | ectopic
        hide Classical Alleles ( 30 )
        For All Classical Alleles Show

        Allele of PclClassMutagenStocksKnown lesion
        Pcl10amorph0 --
        Pcl11amorph2 --
        Pcl12loss of function, hypomorph0 Yes