A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\otu

General Information
SymbolDmel\otuSpeciesD. melanogaster
Nameovarian tumorAnnotation symbolCG12743
Feature typeprotein_coding_geneFlyBase IDFBgn0003023
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)XRecombination map1-22.7
Cytogenetic map7F1-7F1Sequence locationX:8,379,026..8,383,553 [-]
Map ( GBrowse ) detailed view
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Automatically generated summary

See sections below for more information
The gene ovarian tumor is referred to in FlyBase by the symbol otu (CG12743, FBgn0003023). It has the cytological map location 7F1. Its sequence location is X:8379026..8383553. Its molecular function is described as nucleic acid binding. It is involved in the biological processes: female germ-line sex determination; germ cell development; germ-line cyst formation; germ-line sex determination; oogenesis; chromosome organization and biogenesis. 59 alleles are reported. The phenotypes of these alleles are annotated with 13 unique terms, many of which group under: organ system; anatomical structure; organism; germ cell; egg; germarium; nuclear part; cytoplasmic part; developing anatomical structure; chorion; gamete; nuclear chromosome; fusome; portion of tissue. It has 3 annotated transcripts and 3 annotated polypeptides.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
otu: ovarian tumor (R. King)
Homozygous females defective in proliferation, differentition, or maturation of the germ line, depending on the level of activity of the particular allele. So-called quiescent alleles (QUI) produce ovarioles lacking in germ cells; oncogenic alleles (ONC) produce cystocytes that continue dividing and form tumors; differentiated alleles (DIF) produce chambers containing only "pseudonurse" cells (PNCs) or nurse cell/oocyte (NC/O) syncytia. In these, transport of nurse cell cytoplasm to the oocyte is inhibited and chambers are arrested at a pseudo-12 stage [Bishop and King, 1984, J. Cell Sci. 67: 87-119 (fig.)]. Mutant nurse cells that fail to pump their cytoplasm into the oocytes are also unable to form a system of actin microfilament bundles in their cortical cytoplasm during stage 10B (Storto and King, 1988, Dev. Genet. 9: 91-120). The proportions of ovarioles with the different phenotypes appear to reflect the level of function of the particular allele; homozygotes are less severely affected than hemizygotes (80% of ovarioles of females carrying otu1, otu4, otu5, or otu7 in combination with an otu deficiency lack germ cells, whereas 5% of the ovarioles of homozygotes lack germ cells); similarly, the levels of function of certain alleles decline as the developmental temperature is raised. Thus otu1 behaves like a DIF allele at 18, an ONC allele at 23, and a QUI allele at 28. The ovarian tumors which give the mutant gene its name are made up of large numbers of single cystocytes and small numbers of clones of 2-4 interconnected cells [King, 1979, Int. J. Insect Morphol. Embryol. 8: 297-309 (fig.)]. Most cystocytes undergo complete cytokinesis, and there are defects in the construction and functioning of the polyfusomal system during the cycles of cystocyte divisions [Storto and King, 1989, Dev. Genet. 10: 70-86 (fig.)]. Drosophila nurse cells normally undergo nine or ten cycles of DNA replication (Mulligan and Rasch, 1985, Histochemistry 82: 233-47), and the chromatids dissociate so that each nucleus is filled with a jumbled mass of oligotene threads. In otu PNCs, the chromatids remain in register, generating banded polytene chromosomes [Dabbs and King, 1980, Int. J. Insect Morphol. Embryol. 9: 215-29 (fig.)]. Homologues pair and rearrangement configurations can be discerned [King, Riley, Cassidy, White, and Paik, 1981, Science 212: 441-43 (fig.)]. The largest polytenes have undergone 12 cycles of endonuclear replication (Rasch, King, and Rasch, 1984, Histochemistry 81: 105-10). The banding pattern of PNC polytenes is similar to that of the polytenes from larval salivary gland cells (Sinha, Mishra, and Lakhotia, 1987, Chromosoma 95: 108-16; Heino, 1989, Chromosoma 97: 363-73). At 25, otu11 behaves as an ONC allele, the cells dividing to form tumors, but at 18, homozygous females produce oocytes that reach a pseudo-14 stage, contain beta yolk spheres and can undergo early embryogenesis. In the case of DIF alleles such as otu4, females generate pseudo-12 eggs which lack beta yolk spheres and never initiate development. When otu11 is combined with alleles from the QUI class such as otu2, the heteroallelic females are sterile. Heteroalleles between otu11 and certain DIF alleles show various degrees of fertility [Storto and King, 1987, Roux's Arch. Dev. Biol. 196: 210-21 (fig.)]. otu11/otu14 females are fully fertile although the nurse cells, unlike those of wild-type females, contain banded chromosomes (Storto and King, 1988). Oocyte differentiation is destabilized in certain otu alleles; for example, the presumptive oocytes in about 20% of otu7 homozygotes resemble nurse cells in their polytenization, although they lag behind the remaining nurse cells by at least one replication cycle [King, Rasch, Riley, O'Grady, and Storto, 1985, Histochemistry 82: 131-34 (fig.)]. Germ line autonomy has been demonstrated for otu3, otu4, and otu7 (Wieschaus, Audit, and Masson, 1981, Dev. Biol. 88: 92-103; unpublished work cited in King et al., 1986).
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
7F1-7F1  
Limits computationally determined from genome sequence between P{EP}CG1632EP1583 and P{EP}MoeEP1652  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
7E9-7E9
Determined by deficiency mapping (details unspecified).  
7F1-7F4
(determined by in situ hybridisation)  
7F1-7F1
(determined by in situ hybridisation)  
7F1-7F1
(determined by in situ hybridisation)  
7F1-7F1
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
1-22.7
 
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: Cp7Fa+ Cp7Fb+ Cp7Fc+ Cp36+ Cp38+ otu-
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\otu for information on other features
detailed view FBtr0071204 FBtr0071239 FBtr0113454 FBtr0071237 FBtr0071236 FBtr0071238 FBtr0113451 FBtr0113453 FBpp0071151 FBpp0071181 FBpp0089325 FBpp0071180 FBti0068347 FBti0050540 FBti0039055 FBti0038820 FBti0070723 FBti0024953 FBti0071652 FBti0028513 FBti0049817
Comments on Gene Model
EST data suggest additional 5' exon(s)
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0071236
  3101
  811
FBtr0071237
  3227
  853
FBtr0071238
  3241
  853
Additional Transcript Data & Comments
Reported size (kB)
4.0, 3.2, 1.3, 1.1 (northern blot)
Comments
Multiple transcription initiation sites were mapped.
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
otu-PA  
FBpp0071180  
92.6  
811  
7.03  
otu-PB  
FBpp0071181  
97.5  
853  
7.06  
otu-PC  
FBpp0089325  
97.5  
853  
7.06  
Additional Polypeptide Data & Comments
Reported size (kD)
853 (aa); 104, 98 (kD observed); 93 (kD predicted)
110 (kD observed); 93 (kD predicted)
Comments
The 104kD otu protein isoform as expressed from a cDNA construct can rescue all classes of otu mutations. Evidence suggests that the 104kD isoform and not the 98kD isoform preferentially localizes to the developing oocyte. This suggests that the amino acids encoded by the alternate exon are required for oocyte localization.
The ability of the 98kD otu protein isoform as expressed from a cDNA construct to restore fertility to an otu mutant is inversely correlated with the severity of the mutation. Evidence suggests that the 104kD isoform and not the 98kD isoform preferentially localizes to the oocyte.
Two antibodies were made to different regions of the otu protein. Both antibodies recognize both otu protein isoforms.
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Tudor (IPR002999)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    protein binding site
    otu-protein_bind-1
    X:8,383,498..8,383,522
    bound_moiety=ovo-XP
    evidence=experimental
    protein binding site
    otu-protein_bind-2
    X:8,383,774..8,383,798
    bound_moiety=ovo-XP
    evidence=experimental
    protein binding site
    otu-protein_bind-3
    X:8,383,804..8,383,828
    bound_moiety=ovo-XP
    evidence=experimental
    rescue fragment
    comment=Rescue fragment extends from an EcoRI site 664 bases upstream of the transcription start to approx. 300bp downstream of the polyA signal (annotation of downstream site approximate); position of restriction fragment on reference sequence inferred by FlyBase curator.
    evidence=experimental
    linked_to=EcoRI-EcoRI_rfrag
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
     oogenesis stage
     adult stage,spermatogenesis
     adult stage | male
     oogenesis stage,adult stage | female
     adult stage | female
     adult stage,spermatogenesis
     pupal stage
     pupal stage | late
     oogenesis stage | stage S 0-8
     oogenesis stage,adult stage | female
     oogenesis stage
     adult stage | male
     pupal stage | late
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
       oogenesis stage,adult stage
       oogenesis stage,adult stage
       germarium region 2
       oogenesis stage,adult stage
       germarium region 1
       oogenesis stage,adult stage
       oogenesis stage,adult stage
       germarium region 1
       oogenesis stage,adult stage | female
       oogenesis stage,adult stage
       nurse cell
       oogenesis stage,adult stage
       oogenesis stage,adult stage
       nurse cell
       oogenesis stage,adult stage
       oogenesis stage,adult stage
       oogenesis stage,adult stage
       germarium region 2
       oogenesis stage,adult stage
      Marker for
        Subcellular Localization
        CV Term
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        Other Phenotypes
        Allele
        Sterility
        Allele
        Phenotype manifest in
        Allele
        ovary & adult
        nurse cell & nuclear chromosome (with otu13)
        nurse cell & nuclear chromosome (with otu11)
        nurse cell & nuclear chromosome
        nurse cell & nucleus
        hide Classical Alleles ( 39 )
        For All Classical Alleles Show

        Allele of otuClassMutagenStocksKnown lesion
        otu10hypomorph0 Yes
        otu112 Yes
        otu121 --
        otu1390 --
        otu13hypomorph1 Yes
        otu14hypomorph1 Yes
        otu150 --
        otu160 --
        otu170 Yes
        otu180 Yes
        otu190 Yes
        otu1hypomorph2 --
        otu20hypomorph0 Yes
        otu210 Yes
        otu22 --
        otu3hypomorph0 Yes
        otu42 --
        otu550 --
        otu51 Yes
        otu670 --
        otu61 --
        otu7hypomorph2 Yes
        otu80 --
        otu9hypomorph0 --
        otuPR130 Yes
        otuPR140 Yes
        otuPR150 Yes
        otuPR4A0 Yes
        otuPR50 Yes
        otuPR70 Yes
        otuPR90 Yes
        otuPΔ2hypomorph0 Yes
        otuPΔ3hypomorph0 Yes
        otuPΔ40 Yes
        otuPΔ5hypomorph1 Yes
        otuPΔ60 Yes
        otuf023431 --
        otuf079710 --
        otuunspecified
          0 --
          hide Alleles Carried on Transgenic Constructs ( 20 )
          For All Alleles Carried on Transgenic Constructs Show

          Allele of otuClassMutagenStocksKnown lesion
          otu+t5.40 Yes
          otu+t8530 Yes
          otu+Δ10 Yes
          otu+Δ20 Yes
          otu+Δ30 Yes
          otu104.H0 Yes
          otu1040 Yes
          otu2500 Yes
          otu3380 Yes
          otu3800 Yes
          otu4230 Yes
          otu6270 Yes
          otu98.hs0 Yes
          otu980 Yes
          otuGD78173 Yes
          otuR2.80 Yes
          otuT:Avic\GFP0 Yes
          otuT:Ivir\HA10 Yes
          otuhs.PN0 Yes
          otuΔ40 Yes
          hide Aneuploid Aberrations
          Useful deficiency
          Useful duplication
          Disrupted in
          hide Transgenic Constructs & Insertions
          Transgenic Constructs
          Type of construct
          Name
          Expression data