Gene Dmel\Dl
| General Information | ||||
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| Symbol | Dmel\Dl | Species | D. melanogaster | |
| Name | Delta | Annotation symbol | CG3619 | |
| Feature type | protein_coding_gene | FlyBase ID | FBgn0000463 | |
| Created / Updated | 2003-12-01/2003-12-01 | |||
| Genomic Location | ||||
| Chromosome (arm) | 3R | Recombination map | 3-66.2 | |
| Cytogenetic map | 92A1-92A2 | Sequence location | 3R:15,128,453..15,151,935 [-] | |
| Map ( GBrowse ) |
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Summary Information
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Automatically generated summary
See sections below for more information | The gene Delta is referred to in FlyBase by the symbol Dl (CG3619, FBgn0000463). It has the cytological map location 92A1-92A2. Its sequence location is 3R:15128453..15151935. Its molecular function is described as: Notch binding; signal transducer activity; receptor binding; calcium ion binding. It is involved in the biological processes described with 46 unique terms, many of which group under: anatomical structure development; sensory organ development; organ morphogenesis; gamete generation; regulation of developmental process; leg morphogenesis; epithelial cell type specification, open tracheal system; ovarian follicle cell development; stem cell differentiation; establishment of planar polarity. 436 alleles are reported. The phenotypes of these alleles are annotated with 128 unique terms, many of which group under: adult segment; peripheral nervous system; organ system; nervous system; adult mesothoracic segment; embryonic nervous system; embryonic neuron; primordium; imaginal precursor; metatarsus. It has 2 annotated transcripts and 2 annotated polypeptides. | |||
| External Summaries | ||||
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
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| Gene/Allele symbols may differ from current usage | Dl: Delta
A haplo-insufficient member of the group of neurogenic genes originally described on the basis of its dominant
phenotype. Several classes of alleles designated by Vassin and
Campos-Ortega based on the phenotype of heterozygous adults:
Amorphic and strong hypomorphic alleles display wing veins
widened at their junctions with the margin to form delta-like
structures; in addition, they show irregular thickening of
vein 2, and wings frequently held in divergent attitude;
fusion of ommatidia may give rise to disruptions in regular
hexagonal array of eye facets; ocelli are slightly enlarged;
additional bristles are present on head, thorax, and abdomen;
homozygotes die as embryos. Rare antimorphic alleles display
the above phenotype in exaggerated form with irregular widening of all longitudinal wing veins, enlarged deltas, regularly
divergent wings, smaller rougher eyes, larger and often fused
ocelli, and further increase in the numbers of extra bristles;
in addition, tarsal joints 2 to 4, but not 5 are fused; homozygotes are embryonic lethals. Rare recessive alleles show low
levels of survival as homozygotes or trans heterozygtoes with
more severe alleles; survivors usually display a less extreme
version of the phenotype exhibited by heterozygotes for
amorphic alleles; however, some combinations are wild type in
appearance and others (e.g., the antimorphs) are lethal. The
embryonic lethality of homozygotes displays the typical neurogenic phenotype with neural hyperplasia accompanied by epidermal aplasia; most or all cells of the neurogenic ectoderm
recruited into the neurogenic pathway. Transplantation of
homozygous Dl pole cells demonstrate Dl expression during
oogenesis (Dietrich and Campos-Ortega, 1984, J. Neurogenet.
1: 315-32). Dl classed as non-autonomous in that single
cells from the neurogenic ectoderm of Dl- embryos are capable
of giving rise to both neural and epidermal derivatives when
transplanted into the neurogenic region of wild-type embryos,
suggesting that Dl- cells are capable of responding normally
to information from neighboring cells (Technau and Campos-Ortega, 1987, Proc. Nat. Acad. Sci. USA 84: 4500-04). Transcription in cellular blastoderm seen in the ventrolateral
neurogenic ectoderm, with a ventral-to-dorsal gradient of
expression, corresponding to the gradient of neurogenic capabilities of the neurogenic ectoderm. During gastrulation a
metameric pattern of expression appears, disappears, and reappears; as development proceeds complicated spatial and temporal specificities of expression ensue (Vassin et al., 1987).
Interactions with other neurogenic mutations complex; Dl
mutations suppress the spl-enhancing effect of E(spl)
(Shepard, Boverman, and Muskavitch, 1988, Genetics 122: 429-38) and the expression of Ax (Siren and Portin, 1989, Genet.
Res. 54: 23-26); severe alleles fail to survive in heterozygotes with E(spl) loss-of-function alleles [Lehmann, Dietrich,
Jimenez, and Campos-Ortega, 1981, Wilhelm Roux's Arch. Dev.
Biol. 190: 226-29 (fig.)] especially when E(spl) is maternally inherited. Expression of Dl/+ observed to be partially
suppressed by duplications for E(spl)+ (Vassin, Vielmetter,
and Campos-Ortega, 1985, J. Neurogenet. 2: 291-308), yet, de
la Concha, Dietrich, Weigel, and Campos-Ortega (1988, Genetics
118: 499-508) report that extra doses of E(spl)+ enhance the
neurogenic phenotype of Dl-. Dl/+ and Dl- phenotypes are
suppressed by heterozygous and homozygous deficiencies for H,
respectively. For example, H2 is able to suppress the phenotypic effects of Dl9P, either in Dl9P/+ or in Dl9P/Dl9P genotypes; Dl9P/Dl9P is cell lethal in both the eye and the cuticle; Dl9P H2/Dl9P H2 cells, on the other hand, develop nearly
normally (Dietrich and Campos-Ortega, 1984). Expression of Dl
enhanced by duplications for N+ or H+, and three doses of Dl+
enhance expression of N- and neu-, but reduce the severity of
the mam- phenotype. de la Concha, et al. have incorporated
many of these observations into a model of neurogenic-gene
interaction. Dl alleles interact synergistically with certain
Minutes, producing extreme phenotypes and drastically lowered
viability (Schultz, 1929, Genetics 14: 366-419); DlOf
enhances spaCat (Tsukamoto, 1956, DIS 30: 79).
Dl6B
Like Dl1 except that severity of phenotype in homozygous embryos temperature sensitive. At 18 there is patchy
neuralization of cephalic and ventral ectoderm; expression
more severe at 25 and extreme at 29. Temperature-sensitive
period between pole-cell formation and mesodermal segmentation. Clone of ommatidia homozygous for Dl6B, normal when
reared under permissive conditions; in flies raised at 29C,
however, ommatidial pattern severely disturbed, producing
scarring of the eye surface; ommatidia appear larger than normal and interommatidial bristles missing; homozygous mutant
facets contain more than a normal complement of retinula
cells-up to 13; cytodifferentiation apparently normal. Cuticular clones exhibit elaboration of extra bristles at bristle-forming sites [Dietrich and Campos-Ortega, 1984, J. Neurogenet. 1: 315-32 (fig.)].
DlB107
The most severe antimorphic allele (Vassin and
Campos-Ortega, 1987). All components of the phenotype of
heterozygosity for a Dl deletion are present in a drastically
increased manner in heterozygotes for DlB107 (or for DlFE30 or
DlFE32). All wing veins are irregularly widened, veins 3 and 5
being broadened along their whole lengths (same for vein 2 in
DlFE30 and DlFE32) and are occasionally incised posteriorly;
the deltas formed at the wing margins are larger and the wings
are held spread with complete penetrance. The eyes are smaller
and rougher. There is also a severe disturbance of the normal
bristle pattern on the head, thorax, and abdomen owing to a
further increase in the number of bristles. The ocelli are
larger and often fused together, thus forming a half circle.
Finally, tarsal segments 2 to 4 are fused, but segment 5 is
never found to be affected.
Dlvi: Delta viable
Three alleles survive as homozygotes (Vassin, and
Campos-Ortega, 1987). Slight delta-like thickenings at posterior tips of wing veins 2, 3, 4 and 5; roughening of eye.
Dlvi homozygotes also show shortening and frequent fusion of
tarsal segments. A few homozygous embryos fail to hatch,
showing patchy neuralization in cephalic and ventral
territories. Dlvi/+ normal. Trans heterozygotes with dominant alleles show extreme wing, eye, and tarsal abnormalities; Dlvi1 lethal in combination with DlF30, DlF32 DlE50-2,
and DlB107 (Vassin, and Campos-Ortega, 1987).
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Detailed Mapping Data
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| FlyBase Computed Cytological Location | ||||
Cytogenetic map Evidence for location 92A1-92A2
Limits computationally determined from genome sequence between P{EP}EP650 and P{PZ}l(3)1058510585
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| Experimentally Determined Cytological Location | ||||
Cytogenetic map Notes References 92A1-92A2 (determined by in situ hybridisation)
92A-92A (determined by in situ hybridisation)
92A-92A (determined by in situ hybridisation)
92A-92A (determined by in situ hybridisation)
92A2-92A2 (determined by in situ hybridisation)
92A1-92A3 92A1--2
92A1-92A2 (determined by in situ hybridisation)
92A2-92A2 (determined by in situ hybridisation)
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| Experimentally Determined Recombination Data | ||||
| Location | 3- 3-66 | |||
| Left of (cM) | ||||
| Right of (cM) | ||||
| Notes | ||||
| Molecular Map Data | ||||
Gene Order (in direction of increasing cytology)
References Gene Order (overall orientation not stated) References | ||||
Gene Model & Products
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Please see the
GBrowse view of
Dmel\Dl
for information on other features
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| Comments on Gene Model | ||||
DGC clone appears problematic (LD19584): incomplete CDS. | ||||
Transcript Data
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| Annotated Transcripts | ||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) | ||||
| Additional Transcript Data & Comments | ||||
| Reported size (kB) | 5.4, 4.6 (northern blot) 5.4, 4.5, 3.6, 3.5, 2.8 (northern blot) | |||
| Comments | Evidence suggests that the major 5.4kb transcript and
the 4.5kb transcript differ only in polyadenylation site choice. The major Dl transcripts of 5.4kb, 4.6kb, and 3.6kb differ only in the site of polyadenylation. | |||
| External Data | ||||
| Crossreferences | ||||
Polypeptide Data
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| Annotated Polypeptides | ||||
Name FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
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| Additional Polypeptide Data & Comments | ||||
| Reported size (kD) | 832 (aa) 880 (aa) | |||
| Comments | One of a couple of products generated by alternative splicing. It appears that Dl protein is targeted to the cell surface, but is efficiently removed by endocytosis, resulting in vesicular accumulation. Dl protein is used as a marker for the embryonic ventral large intestine. | |||
| External Data | ||||
| Linkouts | PANTHER
- Protein classification by function, families, and pathways
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| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• Aspartic acid and asparagine hydroxylation site (IPR000152)
EGF-like, type 3 (IPR000742)
EGF-like, type 2 (IPR001438)
Delta/Serrate/lag-2 (DSL) protein (IPR001774)
EGF-like calcium-binding (IPR001881)
EGF-like (IPR006209)
EGF (IPR006210)
Notch ligand, N-terminal (IPR011651)
EGF-like region, conserved site (IPR013032)
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Sequences Consistent with the Gene Model
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| DDBJ
/
EMBL / GenBank | DNA sequence Protein sequence Name | |||
