A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\Dl

General Information
SymbolDmel\DlSpeciesD. melanogaster
NameDeltaAnnotation symbolCG3619
Feature typeprotein_coding_geneFlyBase IDFBgn0000463
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)3RRecombination map3-66.2
Cytogenetic map92A1-92A2Sequence location3R:15,128,453..15,151,935 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Delta is referred to in FlyBase by the symbol Dl (CG3619, FBgn0000463). It has the cytological map location 92A1-92A2. Its sequence location is 3R:15128453..15151935. Its molecular function is described as: Notch binding; signal transducer activity; receptor binding; calcium ion binding. It is involved in the biological processes described with 46 unique terms, many of which group under: anatomical structure development; sensory organ development; organ morphogenesis; gamete generation; regulation of developmental process; leg morphogenesis; epithelial cell type specification, open tracheal system; ovarian follicle cell development; stem cell differentiation; establishment of planar polarity. 436 alleles are reported. The phenotypes of these alleles are annotated with 128 unique terms, many of which group under: adult segment; peripheral nervous system; organ system; nervous system; adult mesothoracic segment; embryonic nervous system; embryonic neuron; primordium; imaginal precursor; metatarsus. It has 2 annotated transcripts and 2 annotated polypeptides.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Dl: Delta
thumb
Dl: Delta
From Bridges and Morgan, 1923, Carnegie Inst. Washington Publ. No. 327: 197.
A haplo-insufficient member of the group of neurogenic genes originally described on the basis of its dominant phenotype. Several classes of alleles designated by Vassin and Campos-Ortega based on the phenotype of heterozygous adults: Amorphic and strong hypomorphic alleles display wing veins widened at their junctions with the margin to form delta-like structures; in addition, they show irregular thickening of vein 2, and wings frequently held in divergent attitude; fusion of ommatidia may give rise to disruptions in regular hexagonal array of eye facets; ocelli are slightly enlarged; additional bristles are present on head, thorax, and abdomen; homozygotes die as embryos. Rare antimorphic alleles display the above phenotype in exaggerated form with irregular widening of all longitudinal wing veins, enlarged deltas, regularly divergent wings, smaller rougher eyes, larger and often fused ocelli, and further increase in the numbers of extra bristles; in addition, tarsal joints 2 to 4, but not 5 are fused; homozygotes are embryonic lethals. Rare recessive alleles show low levels of survival as homozygotes or trans heterozygtoes with more severe alleles; survivors usually display a less extreme version of the phenotype exhibited by heterozygotes for amorphic alleles; however, some combinations are wild type in appearance and others (e.g., the antimorphs) are lethal. The embryonic lethality of homozygotes displays the typical neurogenic phenotype with neural hyperplasia accompanied by epidermal aplasia; most or all cells of the neurogenic ectoderm recruited into the neurogenic pathway. Transplantation of homozygous Dl pole cells demonstrate Dl expression during oogenesis (Dietrich and Campos-Ortega, 1984, J. Neurogenet. 1: 315-32). Dl classed as non-autonomous in that single cells from the neurogenic ectoderm of Dl- embryos are capable of giving rise to both neural and epidermal derivatives when transplanted into the neurogenic region of wild-type embryos, suggesting that Dl- cells are capable of responding normally to information from neighboring cells (Technau and Campos-Ortega, 1987, Proc. Nat. Acad. Sci. USA 84: 4500-04). Transcription in cellular blastoderm seen in the ventrolateral neurogenic ectoderm, with a ventral-to-dorsal gradient of expression, corresponding to the gradient of neurogenic capabilities of the neurogenic ectoderm. During gastrulation a metameric pattern of expression appears, disappears, and reappears; as development proceeds complicated spatial and temporal specificities of expression ensue (Vassin et al., 1987). Interactions with other neurogenic mutations complex; Dl mutations suppress the spl-enhancing effect of E(spl) (Shepard, Boverman, and Muskavitch, 1988, Genetics 122: 429-38) and the expression of Ax (Siren and Portin, 1989, Genet. Res. 54: 23-26); severe alleles fail to survive in heterozygotes with E(spl) loss-of-function alleles [Lehmann, Dietrich, Jimenez, and Campos-Ortega, 1981, Wilhelm Roux's Arch. Dev. Biol. 190: 226-29 (fig.)] especially when E(spl) is maternally inherited. Expression of Dl/+ observed to be partially suppressed by duplications for E(spl)+ (Vassin, Vielmetter, and Campos-Ortega, 1985, J. Neurogenet. 2: 291-308), yet, de la Concha, Dietrich, Weigel, and Campos-Ortega (1988, Genetics 118: 499-508) report that extra doses of E(spl)+ enhance the neurogenic phenotype of Dl-. Dl/+ and Dl- phenotypes are suppressed by heterozygous and homozygous deficiencies for H, respectively. For example, H2 is able to suppress the phenotypic effects of Dl9P, either in Dl9P/+ or in Dl9P/Dl9P genotypes; Dl9P/Dl9P is cell lethal in both the eye and the cuticle; Dl9P H2/Dl9P H2 cells, on the other hand, develop nearly normally (Dietrich and Campos-Ortega, 1984). Expression of Dl enhanced by duplications for N+ or H+, and three doses of Dl+ enhance expression of N- and neu-, but reduce the severity of the mam- phenotype. de la Concha, et al. have incorporated many of these observations into a model of neurogenic-gene interaction. Dl alleles interact synergistically with certain Minutes, producing extreme phenotypes and drastically lowered viability (Schultz, 1929, Genetics 14: 366-419); DlOf enhances spaCat (Tsukamoto, 1956, DIS 30: 79).
Dl6B
Like Dl1 except that severity of phenotype in homozygous embryos temperature sensitive. At 18 there is patchy neuralization of cephalic and ventral ectoderm; expression more severe at 25 and extreme at 29. Temperature-sensitive period between pole-cell formation and mesodermal segmentation. Clone of ommatidia homozygous for Dl6B, normal when reared under permissive conditions; in flies raised at 29C, however, ommatidial pattern severely disturbed, producing scarring of the eye surface; ommatidia appear larger than normal and interommatidial bristles missing; homozygous mutant facets contain more than a normal complement of retinula cells-up to 13; cytodifferentiation apparently normal. Cuticular clones exhibit elaboration of extra bristles at bristle-forming sites [Dietrich and Campos-Ortega, 1984, J. Neurogenet. 1: 315-32 (fig.)].
DlB107
The most severe antimorphic allele (Vassin and Campos-Ortega, 1987). All components of the phenotype of heterozygosity for a Dl deletion are present in a drastically increased manner in heterozygotes for DlB107 (or for DlFE30 or DlFE32). All wing veins are irregularly widened, veins 3 and 5 being broadened along their whole lengths (same for vein 2 in DlFE30 and DlFE32) and are occasionally incised posteriorly; the deltas formed at the wing margins are larger and the wings are held spread with complete penetrance. The eyes are smaller and rougher. There is also a severe disturbance of the normal bristle pattern on the head, thorax, and abdomen owing to a further increase in the number of bristles. The ocelli are larger and often fused together, thus forming a half circle. Finally, tarsal segments 2 to 4 are fused, but segment 5 is never found to be affected.
Dlvi: Delta viable
Three alleles survive as homozygotes (Vassin, and Campos-Ortega, 1987). Slight delta-like thickenings at posterior tips of wing veins 2, 3, 4 and 5; roughening of eye. Dlvi homozygotes also show shortening and frequent fusion of tarsal segments. A few homozygous embryos fail to hatch, showing patchy neuralization in cephalic and ventral territories. Dlvi/+ normal. Trans heterozygotes with dominant alleles show extreme wing, eye, and tarsal abnormalities; Dlvi1 lethal in combination with DlF30, DlF32 DlE50-2, and DlB107 (Vassin, and Campos-Ortega, 1987).
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
92A1-92A2  
Limits computationally determined from genome sequence between P{EP}EP650 and P{PZ}l(3)1058510585  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
92A1-92A2
(determined by in situ hybridisation)  
92A-92A
(determined by in situ hybridisation)  
92A-92A
(determined by in situ hybridisation)  
92A-92A
(determined by in situ hybridisation)  
92A2-92A2
(determined by in situ hybridisation)  
92A1-92A3
92A1-92A2
(determined by in situ hybridisation)  
92A2-92A2
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\Dl for information on other features
detailed view FBtr0083740 FBtr0083739 FBpp0083154 FBpp0083153 FBti0043032 FBti0033830 FBti0056910 FBti0070521 FBti0054773 FBti0055723 FBti0069589 FBti0043743 FBti0035931 FBti0056191 FBti0004778 FBti0100076 FBti0039915
Comments on Gene Model
DGC clone appears problematic (LD19584): incomplete CDS.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0083739
  5274
  833
FBtr0083740
  3542
  833
Additional Transcript Data & Comments
Reported size (kB)
5.4, 4.6 (northern blot)
5.4, 4.5, 3.6, 3.5, 2.8 (northern blot)
Comments
Evidence suggests that the 3.5kb, 2.8kb, and minor 5.4kb Dl transcripts are produced by alternative splicing and contain exons not present in the other Dl transcripts.
The minor Dl RNAs were shown to be composed of intronic sequences. Introns excised from Dl primary transcripts accumulate to unusually high levels in embryos and were shown by high resolution in situ hybridizations to localize to 2 foci per embryonic nucleus.
Evidence suggests that the major 5.4kb transcript and the 4.5kb transcript differ only in polyadenylation site choice.
The major Dl transcripts of 5.4kb, 4.6kb, and 3.6kb differ only in the site of polyadenylation.
The Dl 5.4kb and 4.6kb transcripts appear to differ by a 3\\' extension in the longer transcript. Dl transcripts are composed of at least 4 exons.
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Dl-PA  
FBpp0083153  
88.8  
833  
6.75  
Dl-PB  
FBpp0083154  
88.8  
833  
6.75  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
One of a couple of products generated by alternative splicing.
Dl protein has a similar structure to the N protein. Dl protein shares no significant homology to other proteins outside of the EGF repeats.
It appears that Dl protein is targeted to the cell surface, but is efficiently removed by endocytosis, resulting in vesicular accumulation.
Dl protein is used as a marker for the embryonic ventral large intestine.
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name