Gene Dmel\Ddc
| General Information | ||||
|---|---|---|---|---|
| Symbol | Dmel\Ddc | Species | D. melanogaster | |
| Name | Dopa decarboxylase | Annotation symbol | CG10697 | |
| Feature type | protein_coding_gene | FlyBase ID | FBgn0000422 | |
| Created / Updated | 2003-12-01/2003-12-01 | |||
| Genomic Location | ||||
| Chromosome (arm) | 2L | Recombination map | 2-53.9+ | |
| Cytogenetic map | 37C1-37C1 | Sequence location | 2L:19,116,480..19,120,300 [-] | |
| Map ( GBrowse ) |
| |||
Summary Information
| ||||
|
Automatically generated summary
See sections below for more information | The gene Dopa decarboxylase is referred to in FlyBase by the symbol Ddc (CG10697, FBgn0000422). It has the cytological map location 37C1. Its sequence location is 2L:19116480..19120300. Its molecular function is described as: aromatic-L-amino-acid decarboxylase activity; pyridoxal phosphate binding. It is involved in the biological processes: dopamine biosynthetic process from tyrosine; serotonin biosynthetic process from tryptophan; learning and/or memory; catecholamine metabolic process; courtship behavior; eclosion rhythm; cuticle development; melanin biosynthetic process; pigmentation during development; growth. 139 alleles are reported. The phenotypes of these alleles are annotated with 13 unique terms, many of which group under: organ system; adult segment; peripheral nervous system; adult mesothoracic segment; nervous system; cuticle; adult; thoracic segment; adult cuticle; integumentary system. It has 3 annotated transcripts and 3 annotated polypeptides. | |||
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
| ||||
| Gene/Allele symbols may differ from current usage | Ddc: Dopa decarboxylase (T.R.F. Wright and J. Hirsh)
Structural gene for dopa decarboxylase [DDC, 3-4-dihydroxy-L-phenylalanine-carboxylase (EC 4.1.28)] which
catalyzes the decarboxylation of dopa to dopamine (Lunan and
Mitchell, 1969, Arch. Biochem. Biophys. 132: 450-56) and 5-hydroxytryptophan to serotonin (5-hydroxytryptamine) but not
tyrosine to tyramine (Livingstone and Tempel, 1983, Nature
303: 67-70). Native DDC isolated from mature larvae is a
homodimer with subunit molecular weight 54 kd (Clark, Pass,
Venkataraman, and Hodgetts, 1978, Mol. Gen. Genet 162: 287-97). Distinct DDC isoforms are generated in the CNS and hypoderm by alternate splicing of the Ddc primary transcript; the
CNS isoform differs by the addition of 35 amino acids at the
amino terminus (Morgan, Johnson, and Hirsh, 1986, EMBO J.
5: 3335-42). The predicted subunit molecular weights of these
are 57.1 and 53.4 kd, respectively. DDC requires pyridoxal-5-phosphate for activity and is strongly inhibited by heavy-metal ions and the sulfhydryl reagent, N-ethylmaleimide. Initial velocity constants determined by Black and Smarrelli
(1986, Biochim. Biophys. Acta 870: 31-40). The dopamine produced by DDC is necessary to effect sclerotization of the
cuticle, being further metabolized both to N-acetyldopamine
and N-β-alanyldopamine, which after oxidation to their respective quinones, crosslink cuticular proteins. Thus in adults
and white prepupae more than 90% of the DDC activity is
located in the epidermis (Lunan and Mitchell, 1969; Scholnick,
Morgan, and Hirsh, 1983, Cell 34: 37-45). Some DDC activity
(~5%) is found in the central nervous system of white prepupae
and adults where it produces the neurotransmitters dopamine
and serotonin [Wright, 1977, Amer. Zool. 17: 707-21; Livingstone and Tempel, 1983; White and Valles, 1985, Molecular
Basis of Neural Development (Edelman, Gell, and Cowan (eds.).
John Wiley and Sons, N.Y., pp 547-63]. The limited amounts
found in the ovaries (Wright, Steward, Bentley and Adler,
1981, Dev. Genet. 2: 223-35) and proventriculus (Wright and
Wright, Proc. Int. Congr. Genet., 15th, 1978, Part I, p. 615)
are localized in associated neural ganglia (Konrad and Marsh,
1987, Dev. Biol. 122: 172-85). Five peaks of DDC activity
evident during development: at the end of embryogenesis, the
two larval molts, pupariation, and eclosion (Marsh and Wright,
1980, Dev. Biol. 80: 379-87; Kraminsky, Clark, Estelle,
Gietz, Sage, O'Conner, and Hodgetts, 1980, Proc. Nat. Acad.
Sci. USA 77: 4175-79). The largest peak, which occurs at
pupariation, is induced by a coincident ecdysone peak of the
molting larvae (Marsh and Wright, 1980) and has been shown to
be attributable to a rapid increase in translatable DDC mRNA
following administration of 20-0H-ecdysone (Kraminsky et al.,
1980). Ecdysone induces Ddc expression in the mature larval
epidermis within two to four hrs (Karminsky, et al., 1980;
Clark, Doctor, Fristrom, and Hodgetts, 1986, Dev. Biol.
114: 141-50). Since cycloheximide addition is sufficient to
largely abolish this induction, it appears that this response
is an indirect action of ecdysone. A different response of
Ddc to ecdysone occurs in cultured imaginal discs; Ddc induction occurs only subsequent to withdrawal of the hormone
(Clark et al., 1986).
Most mutations in Ddc are homozygous or hemizygous lethal.
The effective lethal phases of the first eight lethal alleles,
Ddcn1-Ddcn8, were almost identical. As hemizygotes over
Df(2L)TW130 almost all mortality is late embryonic with
actively moving larvae, exhibiting unpigmented cephalopharyngeal apparatuses and denticle belts, unable to hatch. When
homozygous there is a fairly uniform shift in effective lethal
phases with mean mortalities from all eight alleles in the
cross of Ddcn/CyO x Ddcn/cn bw being 13.6% embryonic, 14.1%
larval, and 4.8% pupal (Wright and Wright, 1978). Many larvae
hemizygous for lethal alleles, or homozygous deficient for
Ddc, when mechanically released from the egg membranes, continue development to the 3rd larval instar and to the pharate
adult stage.
Genotypes which produce individuals with drastically reduced
DDC activities (~0.5-5% of wild type) exhibit an "escaper"
phenotype characterized by incomplete pigmentation and
sclerotization of the cuticle; developmental time can be prolonged for as many as four or five days; puparia are easily
scored showing melanization at each end of the greenish-gray
pupa case; adults often die or get stuck in the food within 24
hr of eclosion; macrochaetae may be very thin, long, and
straw-colored or colorless; the whole body remains light,
i.e., doesn't take on its normal pigmentation; abdominal markings are apparent but do not darken; upon aging a few hours
wing axillae become melanized similar to the phenotype of sp,
leg joints also become melanized perhaps due to the phenoloxidase wound reaction brought on by ruptures of weakened cuticle; flies walk on tibias rather than tarsi, but leg movements
appear to be coordinated (Wright, Bewley, and Sherald, 1976).
Genotypes that produce flies exhibiting the "escaper" phenotype include heteroallelic intragenic complementing heterozygotes with less than 5% of the expected number of survivors
(Wright, Bewley, and Sherald, 1976), hemizygotes of the ts
allele Ddcts2 raised continuously at 22 or 25, or homozygotes
for Ddcts1 or Ddcts2 exposed to the restrictive temperature 30
for 24- or 48-hour pulses at the end of the pupal stage
(Wright).
Ddc temperature-sensitive mutants have been reported to show
reduced learning after a three-day period at the restrictive
temperature (Tempel, Livingstone, and Quinn, 1984, Proc Nat.
Acad. Sci. USA 81: 3577-81). However, these results cannot
presently be reproduced by other investigators (see Tully,
1987, Trends in Neurosci. 10: 330-35; Hirsh, 1989, Dev.
Genet. 10: 232-38). It is possible that this lack of reproducibility is due to the accumulation of genetic modifiers.
In homozygous deficient larvae normally-serotonin-containing
neurons lack immunologically detectable serotonin but display
normal levels of uptake of exogenously supplied serotonin
(Valles and White, J. Neurosci. 6: 1482-91).
Further studies of these Ddc- larvae, on which catecholamine
histofluorescence studies were performed, revealed novel neuronal subsets lighting up, which become fluorogenic earlier
than the wild-type-like neurons in the mutant CNS (Budnik,
Martin-Morris, and White, 1986, J. Neurosci. 6: 1482-91).
Certain serotonin-containing nerve fibers in developing larvae
are still able to reach their normal targets in Ddc- animals
(which therefore are intrinsically serotonin-minus), but there
is anomalous extra branching associated with the incoming
fibers (Budnik, Wu, and White, 1989, J. Neurosci. 9: 2866-77). Ddc mosaics generated by crossing a transduced Ddc+
insert into R(1)wvC (Gailey, Bordne, Valles, Hall, and White,
1987, Genetics 115: 305-11). Such adult mosaics used to
reveal no absolute requirement of DDC in any particular portion of epidermis or CNS, but there was low recovery of gynandromorphs with large Ddc- patches. Larval mosaics show that
DDC-positive neurons always contain serotonin, but some
serotonin-positive cells (which were near DDC+) have no
detectable enzyme protein; hence, the serotonin phenotype can
be nonautonomous (Valles and White, 1990).
In addition to the naturally occurring alleles, DdcRE,
DdcRS, and Ddc+4, which are described separately, three surveys of natural populations for Ddc variants have been
reported. Estelle and Hodgetts (1984, Mol. Gen. Genet.
195: 434-41) measured DDC levels in 109 strains isogenic for
second chromosomes isolated independently by Bewley (1978,
Biochem. Genet. 16: 769-75) from collections at Raleigh, NC,
Bloomington, IN., and Webster Groves, MO. (WGM). Two (WGM)
strains (including Ddc+4) had increased activities and two had
reduced activities when compared with a Canton-S control.
Marsh and Wright report DDC activities from twelve different
wild-type strains maintained in laboratories for many years.
Relative to Oregon-R (DdcC) females, they ranged from a low of
68% for Urbana males to a high for Canton-S females (180%) and
males (130%) with most strains with activities between
Oregon-R and Canton-S. Aquadro, Jennings, Bland, Laurie-Ahlberg, and Langley (1984, Genetics 107: s3) surveyed
forty-six second chromosome lines isolated from five natural
populations for restriction fragment variations in the 80kb
region surrounding Ddc and for adult DDC activity. No consistent pattern of association between level of DDC activity
and restriction site haplotype was apparent although the lines
showed a two-fold variation in DDC activity. Two lines with
5kb and 1.5kb inserts within an intron and at the 5' end of
Ddc showed normal adult DDC activities.
The temperature-sensitive periods causing lethality for
Ddcts2 homozygotes are primarily during embryogenesis and late
in the third larval instar. Heat shocks, 30 for 24 or 48 hr,
during metamorphosis do not increase lethality significantly
but produce adults with the extreme "escaper" phenotype. DDC
in extracts from adult Ddcts1 and Ddcts2 homozygotes is significantly more thermolabile than that from wild-type controls.
DDC from Ddcts1/+ heterozygotes is much less labile showing a
biphasic inactivation curve. Ddcts2/+ DDC is no more
thermolabile than wild-type DDC (Wright, unpublished data).
Genotypes with reduced levels of DDC activity, e.g.
Ddcn5/Ddcn8 and Ddcn1/Ddcn8 with less than 4% DDC activity,
are not more sensitive to dietary alpha methyl dopa nor are
genotypes with increased levels of DDC activity more resistant
(Marsh and Wright, 1986, Genetics 112: 249-65). In fact, the
reverse may be true: reduced DDC, more resistant; increased
DDC, more sensitive.
DdcC: Dopa decarboxylase-C
DDC activity and resistance to dietary alpha methyl
dopa in the normal range for Oregon-R derived stocks. This
strain was put through the same genetic manipulations as DdcRE
and DdcRS so it could serve as a valid control for those
strains.
DdcDE1: Dopa decarboxylase Differential Expression 1
Hemizygous adults (9% of expected eclose) exhibit an
extreme "escaper" phenotype (see Ddc above) except macrochaetae are normally pigmented suggesting that DdcDE1 is differentially active in the epidermis vis-a-vis the bristle-forming
cells. Pupa cases of DdcDE1 homo- and hemizygotes are wild
type. DDC activity in newly eclosed adult DdcDE1 homozygotes
is 4.4 _ 0.2% and in hemizygotes is 0.6 _ 0.1% of wild-type
controls. Homozygous late embryos have 4.8 _ 2.3% activity.
In striking contrast homozygous white prepupae have 46.5 _
2.8% DDC activity. However, central nervous systems dissected
from these DdcDE1 homozygous white prepupae show a tissue
specific difference having 4.8 _ 2.3% DDC activity compared to
wild-type CNS. Specific DDC activity in DdcDE1 homozygotes
ranges significantly more than two times DDC levels in
DdcDE1/Df(2L)TW130 hemizygotes.
DDC from DdcDE1 homozygotes, crawling third instar larvae
and adults, is less thermostable in vitro in comparison to
controls. Late DdcDE1/DdcDE1 embryos (16-20 hr) have no
detectable mature 2.0 kb Ddc RNA and have reduced levels of
the 2.3 kb RNA. The precise reason for the differential
expression has yet to be established but is not due to position effect variegation (Bishop and Wright, 1987, Genetics
115: 477-91). DdcDE1 phenotype rescued by a 7.5kb transformant of Ddc+ DNA.
Ddclo1: Dopa Decarboxylase low-1
Some hemizygous adults exhibit the incomplete
sclerotization "escaper" phenotype. Not temperature sensitive: hemizygotes being equally viable at 18, 25, and 30 (40-56% of expected). DDC from Ddclo1 hemizygotes is not more
thermolabile in vitro than that from wild type. Heterozygous
Ddclo1/CyO have about 77% wild type specific DDC activity and
Ddclo1 homozygotes have 15-30% activity.
DdcRE: Dopa decarboxylase-RE
Dual phenotype of elevated DDC activity and
increased resistance to dietary alpha methyl dopa relative to
Oregon-R derived controls (DdcC). Specific DDC activity of
newly eclosed adults 158% and DDC crossreacting material (CRM)
156% of the DdcC control. LD50 for alpha methyl dopa is ~0.4
mM vs. ~0.2 mM for the DdcC control. Gene dosage studies with
Ddc+ and l(2)amd+ demonstrate that increased resistance to
alpha methyl dopa is not the result of increased DDC activity.
Thus, the dual phenotype is inferred to arise from a coordinated increase in Ddc+ activity and l(2)amd+ activity produced
either by accumulated changes in a genetic element (or elements) in the close proximity to the Ddc and amd genes.
DdcRS: Dopa decarboxylase-RS
Dual phenotype of elevated DDC activity and
increased resistance to dietary and methyl dopa relative to
Oregon-R derived controls (DdcC). Specific DDC activity of
newly eclosed adults 141% and DDC crossreacting material (CRM)
137% of the DdcC control. Interpretation of phenotype identical to that for DdcRE.
Ddc+4: Dopa decarboxylase +4
No visible phenotype: Ddc+4 overproduces DDC
activity at embryonic hatching, the second to third instar
molt, and at adult eclosion relative to a Canton-S control:
141%, 150%, and 118% respectively; in contrast, underproduces
DDC at pupariation: 50%. These temporal differences are
found in epidermis but not in neural tissues where DDC activities are normal. DDC CRM at pupariation and adult eclosion
are 49% and 140% respectively of Canton-S CRM. No difference
was found in the electrophoretic mobility of non-denatured and
denatured DDC molecules. DDC mRNA is 140%, 52%, and 148% of
Canton-S at embryonic hatching, pupariation, and adult eclosion respectively indicating that the temporal phenotype is
reflected in mRNA levels.
| |||
Detailed Mapping Data
| ||||
| FlyBase Computed Cytological Location | ||||
Cytogenetic map Evidence for location 37C1-37C1
Limits computationally determined from genome sequence between P{lacW}l(2)37Dbk16106&P{lacW}Catsupk05424 and P{lacW}Ddck02104
| ||||
| Experimentally Determined Cytological Location | ||||
Cytogenetic map Notes References 37C1-37C2 (determined by in situ hybridisation)
37B9-37D2 (determined by in situ hybridisation)
37C1-37C2 37C1-37C2 (determined by in situ hybridisation)
37C-37C (determined by in situ hybridisation)
37C-37C (determined by in situ hybridisation)
37B13-37C5 (determined by in situ hybridisation)
| ||||
| Experimentally Determined Recombination Data | ||||
| Location | 2-53.9+ 2-54.1 | |||
| Left of (cM) | ||||
| Right of (cM) | ||||
| Notes | Mapping based on 5/5781 recombinants. | |||
| Molecular Map Data | ||||
Gene Order (in direction of increasing cytology)
References In direction of increasing cytology: CG10561+ Ddc- In direction of increasing cytology: CG10561+ Ddc- CG10561+ Ddc- In direction of increasing cytology: anon-37Ca? amd+ CG10561+ Ddc- l(2)37Cc+ In direction of increasing cytology: Ddc? γTub37C? drl+ l(2)37Da? In direction of increasing cytology: hk- l(2)37Be+ Catsup+ l(2)37Ba+ CG10470+ l(2)37Bb- Dox-A2+ CG10492+ cub? Lim3- amd+ CG10561+ Ddc- l(2)37Cc- l(2)37Cb- l(2)37Cd- l(2)37Ca- l(2)37Ce- l(2)37Cg? brat+ γTub37C? In direction of increasing cytology: hk- l(2)37Be+ Catsup+ l(2)37Ba+ CG10470+ l(2)37Bb- CG10470+ l(2)37Bb- Dox-A2+ CG10492+ cub? Lim3- amd+ CG10561+ Ddc- CG10561+ Ddc- l(2)37Cc- l(2)37Cb- l(2)37Cc- l(2)37Cb- l(2)37Cd- l(2)37Ca- l(2)37Ce- l(2)37Cg? brat+ γTub37C? Gene Order (overall orientation not stated) References hk? l(2)37Be+ Catsup+ l(2)37Ba+ CG10470+ l(2)37Bb- Dox-A2+ CG10492+ cub? Lim3- amd+ CG10561+ Ddc- CG10561+ Ddc- l(2)37Cc- l(2)37Cb- l(2)37Cc- l(2)37Cb- l(2)37Cd- l(2)37Ca- l(2)37Cg- l(2)37Ce? brat+ γTub37C? Overall orientation not stated: amd+ CG10561+ Ddc- Overall orientation not stated: CG10561+ Ddc- Overall orientation not stated: hk? l(2)37Be+ Catsup+ l(2)37Ba+ CG10470+ l(2)37Bb- Dox-A2+ CG10492+ cub? Lim3- amd+ CG10561+ Ddc- CG10561+ Ddc- l(2)37Cc- l(2)37Cb- l(2)37Cc- l(2)37Cb- l(2)37Cd- l(2)37Ca- l(2)37Cg- l(2)37Ce? brat+ γTub37C? | ||||
Gene Model & Products
| ||||
Please see the
GBrowse view of
Dmel\Ddc
for information on other features
| ||||
| Comments on Gene Model | ||||
Transcript Data
| ||||
| Annotated Transcripts | ||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) FBtr0290291
2777
475 | ||||
| Additional Transcript Data & Comments | ||||
| Reported size (kB) | 4.6, 4.05, 2.95, 2.75, 2.22, 2.14, 2.10, 1.92, 1.75 (northern blot) 2.1 (northern blot) 2.3, 2.0 (northern blot) | |||
| Comments | The transcripts hybridize with an intron sequence probe
and are presumed to be precursor RNAs. The Ddc+R2.1
transcript is believed to correspond to the Ddc gene. Levels of transcript
through developmental stages parallel levels of enzymatic activity. Two other
transcripts are also identified by the Ddc-containing probe, one which is 0.8
kb and one which is 3.2 kb, but these are not thought to correspond to the Ddc
gene product. | |||
| External Data | ||||
| Crossreferences | ||||
Polypeptide Data
| ||||
| Annotated Polypeptides | ||||
Name FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0288730
53.6
475
6.46
| ||||
| Additional Polypeptide Data & Comments | ||||
| Reported size (kD) | 60 (kD observed) 56 (kD observed) 510, 502 (aa); 56.7, 56.2 (kD predicted) | |||
| Comments | ||||
| External Data | ||||
| Linkouts | PANTHER
- Protein classification by function, families, and pathways
| |||
| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• Pyridoxal phosphate-dependent decarboxylase (IPR002129)
Aromatic-L-amino-acid decarboxylase (IPR010977)
TRANSFAC
- Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
•
| |||
Sequences Consistent with the Gene Model
| ||||
| DDBJ
/
EMBL / GenBank | DNA sequence Protein sequence Name | |||
