A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\cad

General Information
SymbolDmel\cadSpeciesD. melanogaster
NamecaudalAnnotation symbolCG1759
Feature typeprotein_coding_geneFlyBase IDFBgn0000251
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)2LRecombination map
Cytogenetic map38E9-38E10Sequence location2L:20,770,735..20,783,142 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene caudal is referred to in FlyBase by the symbol cad (CG1759, FBgn0000251). It has the cytological map location 38E9-38E10. Its sequence location is 2L:20770735..20783142. Its molecular function is described as: RNA polymerase II transcription factor activity; specific RNA polymerase II transcription factor activity; sequence-specific DNA binding; transcription factor activity. It is involved in the biological processes: gastrulation involving germ band extension; germ-band extension; hindgut morphogenesis; segment specification; genital disc development; Malpighian tubule morphogenesis; analia development; anterior/posterior axis specification; genital disc anterior/posterior pattern formation; regulation of transcription, DNA-dependent. 23 alleles are reported. The phenotypes of these alleles are annotated with 19 unique terms, many of which group under: anatomical structure; adult; organ system; embryonic segment; embryonic tagma; embryonic abdomen; abdominal segment 8; organism; abdominal segment 10; embryonic head; peripheral nervous system; adult segment; late extended germ band embryo. It has 2 annotated transcripts and 2 annotated polypeptides.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
cad: caudal
Homozygous lethal; homozygous cad embryos from cad/+ mothes develop into nearly normal first-instar larvae, which, however, lack cuticular structures of the external terminalia, e.g., the anal tuft, parts of the anal pads and the terminal sense organs. Distribution of cad+ gene product in such embryos indistinguishable from that in their cad/+ and +/+ sibs, evidently maternally derived. cad/+ offspring from cad/cad oogenic cysts indistinguishable from those from cad/+ cysts; larvae lack portions of the eighth abdominal segment and sometimes parts of the fourth and less frequently other even-numbered abdominal segments; frequently they develop into normal adults. cad/cad embryos from homozygous cad cysts display variably abnormal segmentation; head and anterior thorax normal; many posterior segments deleted with T2 and odd-numbered abdominal segments more resistant to deletion; most of eighth abdominal segment and terminalia (but not some parts of posterior spiracles) deleted; replaced by small plates of sclerotized cuticle resembling mouth hooks. Maternal germ-line transciption of the cad/+ gene demonstated by the detection of transcript in oocytes and nurse cells; transcripts uniformly distributed in early embryos; in the syncytial blastoderm transcripts disappear from the anterior end of the embryo and an anterior-posterior gradient develops with heaviest concentration posteriorly. The cellular blastoderm shows a band of hybridization three to five cells wide encircling the embryo .13 to .19 of the distance from posterior to anterior end; label is internalized during gastrulation and is seen in hind gut, midgut, and Malpighian tubules. Immunocytochemical observations detect no cad polypeptide until the stage 5 or 6 embryo. In the syncytial blastoderm there is dramatic accumulation of cad polypeptide in the same antero-posterior gradient as observed for transcript; the polypeptide localizes strongly to nuclei during interphase. The same gradient develops over time in unfertilized eggs. Subsequent collapse of the gradient into a posteriorly disposed circumferential band follows the behavior of transcript. Embryos produced by homozygous BicD or bcd females display an uniform distribution of cad+ product, which subsequently becomes restricted to symmetrically disposed anterior and posterior rings of cad polypeptide. During gastrulation cad+ polypeptide persists in a position suggesting a fifteenth parasegment, in the posterior midgut and Malpighian tubules, in six narrow bands at double segment intervals, in pairs of neuromeres initially in parasegments 1-14, later in thorax and anterior abdomen, and in portions of the genital disc, possibly precursors of the analia. In third instar larvae transcripts are also found in germ cells of both sexes and in the presumptive hind gut and analia of the genital disc. The cad gene product can increase the level of ftz transcription in the posterior half of the embryo by interacting with multiple copies of a TTTATG consensus sequence located in the zebra-stripe element of the ftz promoter (Dearolf, Topol, and Parker, 1989, Nature 341: 340-42).
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
38E9-38E10  
Limits computationally determined from genome sequence between P{PZ}Hr3802306&P{PZ}dia1 and P{EP}CG31673EP432  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
38E-38F
(determined by in situ hybridisation)  
38E-38F
(determined by in situ hybridisation)  
38E5-38E6
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: anon-38E.18- cad+ Pomp+
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\cad for information on other features
detailed view FBtr0081412 FBtr0081413 FBpp0089336 FBpp0080942 FBti0069393 FBti0035093 FBti0056864
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0081412
  2519
  427
FBtr0081413
  2227
  427
Additional Transcript Data & Comments
Reported size (kB)
2.6, 2.4 (northern blot)
Comments
The BRE (bcd response element) region of the cad transcript was used to identify RNA binding domains in the bcd protein. In addition,various cad 3\\' UTR constructs were used to investigate the dependance of cad upon bcd for proper localization and activity.
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
cad-PA  
FBpp0080942  
45.7  
427  
9.70  
cad-PB  
FBpp0089336  
45.7  
427  
9.70  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
cad protein forms a gradient from posterior to anterior in the developing embryo and this gradient is dependant upon bcd protein. The PEST domain of bcd protein is necessary for the maintainance of the cad gradient, as deletions of PEST sequences in the bcd coding region resulted in an inability to repress cad protein translation in the anterior region of the embryo.
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
TRANSFAC - Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
  • T00079
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    protein binding site
    cad-protein_bind-9
    2L:20,782,446..20,782,566
    bound_moiety=bcd-XP
    comment=bicoid binding region (BBR); position on reference sequence inferred by FlyBase curator based on mRNA coordinates reported in FBrf0086595.
    evidence=experimental
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
     embryonic stage | <embryonic cycle 12
     embryonic stage | >=contracted germ band stage
     hindgut primordium
     oogenesis stage,adult stage
     egg chamber
     larval stage | third instar
     Malpighian tubule
     embryonic stage | extended germ band stage
     amnioproctodeal invagination
     embryonic stage | >=contracted germ band stage
     posterior midgut primordium
     oogenesis stage,adult stage
     egg chamber
     oogenesis stage,adult stage | stage S11-S14
     embryonic stage | embryonic cycle 13
     embryonic stage | stage 4
     embryonic stage | cellular blastoderm
     larval stage | third instar
     embryonic stage | 16-18 hours
     embryonic/larval midgut
     oogenesis stage,adult stage | stage S6-S11
     adult stage | female
     oogenesis stage,adult stage
     nurse cell
     oogenesis stage,adult stage
     embryonic stage | stage 13
     posterior embryonic/larval midgut
     adult stage | female
     embryonic stage | stage 5
     embryonic stage | stage 5
     embryonic stage | early
     embryonic stage | stage 13
     embryonic stage | cellular blastoderm
     embryonic stage | extended germ band stage
     amnioproctodeal invagination
     embryonic stage | extended germ band stage
     proctodeum
     larval stage | third instar
     genital disc | posterior
     embryonic stage | stage 4
     embryonic stage | syncytial blastoderm
     embryonic stage | >=contracted germ band stage
     posterior midgut primordium
     oogenesis stage | unfertilized egg
     embryonic stage | >=contracted germ band stage
     hindgut primordium
     larval stage
     embryonic stage | 16-18 hours
     embryonic/larval hinddgut
     embryonic stage | embryonic cycle 13-14
     pupal stage | <early
     larval stage | third instar
     posterior midgut primordium
     embryonic stage | stage 4
     embryonic stage | >=2-4 hr
     embryonic stage | stage 4
     embryonic stage | 16-18 hours
     malpighian tubules
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
       embryonic stage | stage 14
       posterior midgut
       embryonic stage | contracted germ band stage
       epidermis | posterior
       embryonic stage | stage 4
       embryonic stage | embryonic cycle 8-14
       embryonic stage | gastrula
       larval stage | third instar
       male genital disc | restricted
       embryonic stage | stage 14
       malpighian tubule
       embryonic stage | embryonic cycle 9
       embryonic stage | embryonic cycle 14A
       embryonic stage | embryonic cycle 12-14
       embryonic stage | extended germ band stage
       posterior midgut primordium
       oogenesis stage
       unfertilized egg
       embryonic stage | extended germ band stage
       amnioproctodeal invagination
       embryonic stage | stage 4
       embryonic stage | stage 11
       embryonic stage | embryonic cycle 14B
       embryonic stage | stage 4
       embryonic stage | late
       posterior embryonic/larval midgut
       embryonic stage | extended germ band stage
       hindgut primordium
       larval stage | third instar
       female genital disc | restricted
       embryonic stage | embryonic cycle 10-13
       embryonic stage | extended germ band stage
       germ band | posterior
       embryonic stage | gastrulation
       embryonic stage | stage 11
       embryonic stage | stage 4
       embryonic stage | late
       embryonic anal pad
       embryonic stage | contracted germ band stage
      Marker for
        Subcellular Localization
        CV Term
        cytoplasm nucleus
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0081412 FBtr0081413
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        FlyExpress - Embryonic expression images (BDGP data)
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        Other Phenotypes
        Allele
        Phenotype manifest in
        Allele
        larval hindgut & embryo
        hide Classical Alleles ( 8 )
        For All Classical Alleles Show

        Allele of cadClassMutagenStocksKnown lesion
        cad10 --
        cad2amorph, loss of function1 --
        cad2L-264-120 --
        cad32 --
        cad40 --
        cadem4590 --
        cadmd509hypomorph
          1 Yes
          cadunspecified
            0 --
            hide Alleles Carried on Transgenic Constructs ( 15 )
            For All Alleles Carried on Transgenic Constructs Show

            Allele of cadClassMutagenStocksKnown lesion
            cadAct5C.3250 Yes
            cadAct5C.PH0 Yes
            cadCadmat0 Yes
            cadGD13940 Yes
            cadGD168720 Yes
            cadHT.hs0 Yes
            cadScer\UAS.cHa0 Yes
            cadScer\UAS.cMa0 Yes
            cada.cFa0 Yes
            caddicis.a.T:Ecol\lacZ