Gene Dmel\Antp
| General Information | ||||
|---|---|---|---|---|
| Symbol | Dmel\Antp | Species | D. melanogaster | |
| Name | Antennapedia | Annotation symbol | CG1028 | |
| Feature type | protein_coding_gene | FlyBase ID | FBgn0000095 | |
| Created / Updated | 2003-12-01/2003-12-01 | |||
| Genomic Location | ||||
| Chromosome (arm) | 3R | Recombination map | 3-47.5 | |
| Cytogenetic map | 84A6-84B2 | Sequence location | 3R:2,721,975..2,824,950 [-] | |
| Map ( GBrowse ) |
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Summary Information
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Automatically generated summary
See sections below for more information | The gene Antennapedia is referred to in FlyBase by the symbol Antp (CG1028, FBgn0000095). It has the cytological map location 84A6-84B2. Its sequence location is 3R:2721975..2824950. Its molecular function is described as: specific RNA polymerase II transcription factor activity; sequence-specific DNA binding; transcription factor activity. It is involved in the biological processes: specification of segmental identity, antennal segment; midgut development; regulation of transcription from RNA polymerase II promoter; segment specification; heart development; lymph gland development; regulation of transcription, DNA-dependent. 142 alleles are reported. The phenotypes of these alleles are annotated with 76 unique terms, many of which group under: adult segment; peripheral nervous system; adult mesothoracic segment; thoracic segment; appendage segment; adult external prothorax; nervous system; antennal segment; embryonic segment; cuticle. It has 11 annotated transcripts and 11 annotated polypeptides. | |||
| External Summaries | ||||
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
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| Gene/Allele symbols may differ from current usage | Antp: Antennapedia
Null loss-of-function alleles result in embryonic
lethality. Animals succumb at the end of embryogenesis and
show homeotic transformations in the larval cuticle of the
first, second, and third thoracic segments. Specifically the
cuticle derived from parasegments 4 and 5 are transformed to a
more anterior identity such that the posterior of the first
thorax produces fragments of mouth hook material on its dorsal
surface presumably owing to a new posterior labial identity,
whereas the anterior of the second thorax resembles the first
thorax. The anterior of the third thoracic segment is weakly
transformed toward a T1-like identity. The posterior of T2 is
presumably T1 like as there are no gnathal structures seen in
this compartment. There are also partial loss-of-function
mutations which allow survival into the larval, pupal, and
adult stages. Those that allow adult survival produce animals
in which the anterior of the dorsal mesothorax shows a
transformation to prothorax. There are no other apparent
defects associated with these lesions. Those "leaky" mutants
which die in the pupal and larval stages show similar parasegmental transformations as the null alleles, except that only
the parasegment 4 to 3 homeosis is generally apparent.
Animals which survive to the pupal stage fail to evert their
anterior spiracles resulting in a blunt appearance of the
anterior pupa. This same phenotype is seen in genotypes which
survive to the adult stage. These partial mutants in many
cases are associated with chromosome rearrangements notably
deletions which approach the locus from its distal end. Moreover these mutations have been shown to complement fully other
seemingly null mutations. Subsequent molecular analyses have
shown that these results are accounted for by the presence of
two promotors, one, P1, distal to the other, P2. The partial
mutants affect the ability of the P1 promotor to initiate
transcription, while the complementing lesions inactivate P2.
Null mutants affect the transcription unit and protein encoding portion of the gene which is common to both promotors (see
below).
X-ray induced somatic clones of Antp- cells demonstrate that
the locus is required in the adult for the proper development
of the dorsal pro and mesothorax, and legs. The former is
reduced in size presumably reflecting an anteriorward
transformation while the latter are transformed to antennae.
Thus Antp+ function is required in the embryo and adult in
parasegments 4 and 5 to prevent more anterior segmental identities, specifically those normally found in the anterior
thorax and head.
The Antp locus was initially recognized by virtue of several
striking dominant gain-of-function alleles. Thirteen of these
transform the antenna of the adult into a mesothoracic leg
(Antp49, AntpB, AntpYu, AntpPw, AntpLC, AntpR, AntpWu, Antp50,
AntpRM, Antp73b, AntpCB, Antp72j, and AntpNs). Three of these
also have effects on the orbit of the eye and the vibrissal
region of the ventral head (AntpRM, Antp72j, and AntpNs).
There are also two dominant alleles (AntpCtx and AntpW) which
transform portions of the head capsule (dorsal and posterior)
and the eye to a dorsal mesothoracic identity. In some cases
this includes the production of wing tissue in the eye.
Finally, a unique dominant AntpHu produces bristles on the
normally bald propleurae just ventral to the mesothoracic
spiricle. This latter phenotype has been interpreted as the
production of sternopleural bristles on the propleurae, and
thus a T1 to T2 transformation. With the exception of AntpNs
and Antp72j all these dominant lesions are associated with
recessive lethality and gross chromosome rearrangements. All
the breakpoints fall in the interval between the distal and
proximal promotors. The dominant gain-of-function phenotype
results from the misregulation of the P2 promotor by position
affect or by the production of novel transcripts initiated in
the newly juxtaposed sequences and spliced to the downstream
Antp coding sequences. Both events result in the ectopic
accumulation of the Antp protein product in the eye-antennal
disc where the normal head repressive function of the gene
causes the observed alteration. The recessive lethality associated with these lesions falls into the partially deficient
category mentioned above. That is, these lesions show complementation with the P2 specific (Antp1 and Antp23) mutations
and in general show only strong parasegment 4 -> parasegment 3
transformations. However, there is a gradient of this affect
among the breakpoints. Those closest to P1 and furthest from
P2 are the weakest, whereas those close to P2 show the strongest phenotype and earlier lethal phase. This same result is
obtained with breakpoint mutations in the P2-to-P1 interval
which are not associated with a dominant phenotype. Therefore
this interval likely contains sequences necessary for the
proper regulation of the P2 promoter.
Three of the dominant gain-of-function lesions (AntpHu,
Antp73b, and AntpNs) have been reverted. The revertants are
either complete nulls, thus obviating the potential for ectopic expression, or are partial mutants; the latter mutants
likely remove the potential for ectopic expression by altering
the juxtaposed sequences required for abnormal P2 activity.
Both in situ hybridization and immunostaining have been used
to determine the spatio-temporal pattern of Antp expression.
Both the protein and RNA are strongly accumulated in the ventral nerve cord and more weakly in the epidermis and mesoderm
of the embryo. Protein and RNA are first detected during cellular blastoderm in a band of cells in the parasegment 4-6
anlagen. This initial spatial pattern is further elaborated
at full germ-band extension. In the ectoderm Antp products
are found starting in the region of the first thoracic segment
(parasegments 3 and 4) and extending posteriorly to the level
of the seventh abdominal segment. In the mesoderm, they are
found in parasegments 4-6. During germ band shortening the
gene products are accumulated in the CNS from parasegment 4
(posterior T1) through to the posterior end of the ventral
nerve cord. In the integument transcripts and protein are
mainly restricted to the parasegments 4-5 interval although
some weak expression can be seen in parasegments 3. As
embryogenesis proceeds, the posterior CNS expression diminishes but is still detectable at the end of embryogenesis.
The major accumulation in the CNS at this time is in the neuromeres of parasegments 4 and 5. The mesodermal expression is
found in the anterior midgut; quenching of Antp expression is
found in the posterior portion of the anterior midgut and has
been shown to be dependent on the expression of Ubx. In later
stages Antp protein can be detected in the leg, dorsal
prothoracic, and wing discs.
Apx: Antennapedex (R.E. Denell)
Males and heterozygous females show variable expression from small additional segment on the third antennal segment to a nearly complete leg including femur, tibia, and
tarsus. Arista usually present. Homozygous females lethal
but X0 males survive. Crosses involving either Apx males or
females produce many inviable embryos.
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Detailed Mapping Data
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| FlyBase Computed Cytological Location | ||||
Cytogenetic map Evidence for location 84A6-84B2
Limits computationally determined from genome sequence between P{PZ}pb04498 and P{lacW}l(3)L2100L2100
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| Experimentally Determined Cytological Location | ||||
Cytogenetic map Notes References 84A-84A 84B1-84B2 (determined by in situ hybridisation)
84A-84A (determined by in situ hybridisation)
84B1-84B2 (determined by in situ hybridisation)
84B1-84B2 (determined by in situ hybridisation)
84A4-84C2 (determined by in situ hybridisation)
84B1-84B1 (determined by in situ hybridisation)
84B1-84B1 (determined by in situ hybridisation)
84B1-84B2 (determined by in situ hybridisation)
84A-84C (determined by in situ hybridisation)
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| Experimentally Determined Recombination Data | ||||
| Location | 3-47.5 3-48 | |||
| Left of (cM) | ||||
| Right of (cM) | ||||
| Notes | AntpHu has been recombination mapped to position 3-51. | |||
| Molecular Map Data | ||||
Gene Order (in direction of increasing cytology)
References In direction of increasing cytology: Dfd? anon-84Ba? anon-84Bb? Scr- anon-84Bc? Scr- ftz+ anon-84Bd- Antp- In direction of increasing cytology: Antp- sas+ In direction of increasing cytology: Scr- ftz+ anon-84Bd- Antp- Gene Order (overall orientation not stated) References | ||||
Gene Model & Products
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Please see the
GBrowse view of
Dmel\Antp
for information on other features
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| Comments on Gene Model | ||||
Evidence for internal alternative splicing is from FBrf0047943 and FBrf0048668. There may be additional alternative transcripts created in vivo. EST data support existence of multiple transcripts | ||||
Transcript Data
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| Annotated Transcripts | ||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) | ||||
| Additional Transcript Data & Comments | ||||
| Reported size (kB) | 5.0, 3.5 (northern blot) 4.9, 4.7, 3.5, 3.3, 1.0 (northern blot) 3.6 (unknown) | |||
| Comments | Alternative forms of Antp transcripts are formed by the use of two splice donor sites at the 3\\' end of the seventh exon that are separated by 12 bases and by the exclusion or inclusion of the 39 base sixth exon. This is in addition to the previously noted use of alternative promoters and polyadenylation sites. Several transcripts of ~1 kb are detected with an Antp exon 1 probe. An 849 base cDNA with a polyA tail has been isolated. A 2.2kb cDNA was isolated from an early embryonic cDNA library. The cDNA hybridizes to four regions within a 100kb span of genomic DNA. A 2.9kb cDNA was isolated from a pupal cDNA library. The cDNA hybridizes to three regions within a 37kb span of genomic DNA. The first region falls within an intron of the larger Antp transcription unit and the second two regions are in common between the two transcription units. | |||
| External Data | ||||
| Crossreferences | ||||
Polypeptide Data
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| Annotated Polypeptides | ||||
Name FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
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| Additional Polypeptide Data & Comments | ||||
| Reported size (kD) | 67 (aa) 378 (aa); 43 (kD predicted) 378, 374, 365, 361 (aa) 374 (aa) | |||
| Comments | Sequences of the mammalian thyroid transcription factor 1 (TTf-1) and Antp homeodomains were exchanged to identify regions responsible for DNA binding specificity. Mutations that make the TTf-1 recognition helix identical to that of Antp have no effect on binding specificity. Sequences outside of the recognition helix are shown to play a role in determining binding specificity. The secondary structure of an N-terminally elongated Antp protein fragment, including both the homeodomain and the YPWM motif, from amino acids -14 to +67 was determined by NMR in solution (this study). Results strongly support the conclusion that the homeodomain is connected through a flexible linker to the main body in the Antp protein and that the minor groove contacts by residues 1-6 are intrinsic to the DNA binding interactions of the Antp protein (this study). The stability and specificity of the DNA binding previously observed for the shorter Antp
homeodomain polypeptide is preserved for the elongated polypeptide. The 1:1 complex of the mutant AntpC39S homeodomain with a 14bp DNA fragment corresponding to the BS2 binding site was studied by NMR spectroscopy in aqueous solution. The AntpC39S protein and the DNA were found to have similar conformations in the free form and in the complex. In the complex, intermolecular 1H-1H Overhauser effects (NOE) are involved in protein-DNA binding. NMR spectroscopy in solution was used to determine the structure of the Antp homeodomain. It includes 3 well defined helices (residues 10-21, 28-38, and 42-52) and a more flexible fourth helix (53-59). Residues 30-50 form a helix-turn-helx motif like those in various prokaryotic repressors. The fourth helix is unique to the Antp homeodomain. | |||
| External Data | ||||
| Linkouts | ||||
| Crossreferences | InterPro
domains - A database of protein families, domains, and functional sites
• Homeobox (IPR001356)
Homeobox protein, antennapedia type (IPR001827)
Homeodomain-like (IPR009057)
Homeodomain-related (IPR012287)
PDB
- Protein Data Bank. An information portal to biological macromolecular structures
TRANSFAC
- Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
•
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Sequences Consistent with the Gene Model
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| DDBJ
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EMBL / GenBank | DNA sequence Protein sequence Name | |||
| UniProtKB/Swiss-Prot | ||||
| UniProtKB/TrEMBL | ||||
| Maps to | ||||
| Does NOT map to | ||||
| Identified with | ||||
Mapped Features & Mutations
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Please see
GBrowse
or insertion reports for information on insertions of transgenic
constructs and features not listed here
Type Symbol & Location Additional Notes References aberration junction In(3R)Antp[73b].bk1 3R:2,796,393..2,823,927 protein binding site Antp-protein_bind-1 3R:2,825,156..2,825,170 bound_moiety=Adf1-XP comment=TF:R00130, Antp P1-C evidence=experimental protein binding site Antp-protein_bind-2 3R:2,825,120..2,825,144 bound_moiety=Adf1-XP comment=TF:R00131, Antp P1-B evidence=experimental protein binding site Antp-protein_bind-3 3R:2,825,047..2,825,060 bound_moiety=Adf1-XP comment=TF:R00132, Antp P1-A evidence=experimental protein binding site Antp-protein_bind-4 3R:2,825,027..2,825,040 bound_moiety=Adf1-XP comment=TF:R00132, Antp P1-A evidence=experimental protein binding site Antp-protein_bind-10 3R:2,827,254..2,827,261 bound_moiety=ftz-XP evidence=experimental protein binding site Antp-protein_bind-11 3R:2,759,096..2,759,117 bound_moiety=Ubx-XP evidence=experimental bound_moiety=abd-A-XP protein binding site Antp-protein_bind-12 3R:2,758,778..2,758,791 evidence=experimental protein binding site Antp-protein_bind-13 3R:2,830,986..2,831,027 bound_moiety=Antp-XP evidence=experimental protein binding site Antp-protein_bind-14 3R:2,826,123..2,826,136 bound_moiety=ftz-XP evidence=experimental protein binding site Antp-protein_bind-15 3R:2,758,676..2,758,698 bound_moiety=Ubx-XP evidence=experimental protein binding site Antp-protein_bind-16 3R:2,759,514..2,759,528 bound_moiety=Ubx-XP evidence=experimental bound_moiety=abd-A-XP protein binding site Antp-protein_bind-17 3R:2,760,146..2,760,191 evidence=experimental bound_moiety=Ubx-XP bound_moiety=abd-A-XP protein binding site Antp-protein_bind-18 3R:2,823,481..2,823,496 bound_moiety=ftz-XP evidence=experimental protein binding site Antp-protein_bind-19 3R:2,758,587..2,758,615 evidence=experimental protein binding site Antp-protein_bind-20 3R:2,759,395..2,759,422 evidence=experimental bound_moiety=Ubx-XP bound_moiety=abd-A-XP protein binding site Antp-protein_bind-21 3R:2,830,985..2,831,067 bound_moiety=Ubx-XP evidence=experimental protein binding site Antp-protein_bind-22 3R:2,759,244..2,759,253 bound_moiety=Ubx-XP evidence=experimental bound_moiety=abd-A-XP protein binding site Antp-protein_bind-23 3R:2,831,032..2,831,072 bound_moiety=Antp-XP evidence=experimental protein binding site Antp-protein_bind-24 3R:2,824,588..2,824,599 bound_moiety=ftz-XP evidence=experimental protein binding site Antp-protein_bind-25 3R:2,759,631..2,759,661 bound_moiety=Ubx-XP evidence=experimental bound_moiety=abd-A-XP protein binding site Antp-protein_bind-26 3R:2,759,001..2,759,016 bound_moiety=Ubx-XP evidence=experimental bound_moiety=abd-A-XP protein binding site Antp-protein_bind-27 3R:2,758,510..2,758,544 evidence=experimental protein binding site Antp-protein_bind-28 3R:2,760,472..2,760,489 bound_moiety=Ub | ||||
