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Gene Dmel\CG9975

General Information
Symbol	Dmel\CG9975	Species	D. melanogaster
Name	CG9975	Annotation symbol	CG9975
Feature type	protein_coding_gene	FlyBase ID	FBgn0034435
Created / Updated	2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	56D1-56D1	Sequence location	2R:15,229,314..15,233,067 [+]
Map ( GBrowse )	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol CG9975 (FBgn0034435). It has the cytological map location 56D1. Its sequence location is 2R:15229314..15233067. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 56D1-56D1   Limits computationally determined from genome sequence between P{PZ}ena02029&P{lacW}corak08713 and P{lacW}htsk06121
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology) References Gene Order (overall orientation not stated) References
Gene Model & Products
Please see the GBrowse view of Dmel\CG9975 for information on other features
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9975-RA FBtr0086518  NM_137568   3053   513
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kD) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9975-PA   FBpp0085706   55.3   513   8.71     NP_611412   AAF57576
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE003796 AAF57576   AI297401   AI389532   AI404749   AI406073   AI944404   AI944855   AI945102   AI945167   AI945483   AI946062   AI946384   AI946401   AI946726   AI946814   AI947193   BE662010   BE975262   BE976210   BE976485   BE976610   BE976620   BE976648   BE977061   BE977276   BE977796   BE978019   BE978485   BE978672   BE978798   BF485733   BF486093   BF486458   BF486542   BF486612   BF487701   BF488181   BF488204   BF488213   BF488443   BF488459   BF488471   BF489281   BF489843   BF490013   BF490161   BF490405   BF491434   BF491652   BF491899   BF492367   BF493562   BF494700   BF494956   BF495004   BF495036   BF495154   BF495155   BF495367   BF495400   BF495401   BF496027   BF496645   BF496665   BF496848   BF497239   BF497614   BF497640   BF497677   BF497696   BF497967   BF498136   BF498279   BF498435   BF498695   BF498750   BF498906   BF499177   BF499276   BF499637   BF499769   BF499924   BF499938   BF500386   BF500792   BF501127   BF501187   BF501292   BF501492   BF501781   BF501864   BF501887   BF501908   BF502049   BF502889   BF503296   BF503309   BF503400   BF503485   BF503538   BF503883   BF503907   BF504149   BF504159   BF504344   BF504543   BF504796   BF505186   BF505262   BF505267   BF505388   BF505676   BF505730   BF506241   BG633703   BG634084   BG634595   BG634961   BG635216   BT001328 AAN71083   EL874082   EL874083   EL874210   EL878681
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IHB1 A1ZBJ8
Maps to
Does NOT map to
Identified with	AT17665 (BDGP Project Members, 2000-) bs20d05 bs24g02 bs01a05 bs06c03 bs09g03 bs09a04 bs36b08 bs13d07 bs30h12 bs25b10 bs04b02 GH24571 GH26259 GH20739 LP11692 bs30a07.y1 (Oliver, 2001.8.16)
Mapped Features & Mutations
Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here Type Symbol & Location Additional Notes References
External Data
Linkouts	DEDB - Drosophila exon database: splicing graphs • 11861
Crossreferences
Expression Data
FlyBase-Curated Data
Transcript and Protein data	Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
Summary of Transcript Expression
Stage Tissue/Position Reference
Marker for
Subcellular Localization
CV Term
Summary of Polypeptide Expression
Stage Tissue/Position Reference
Marker for
Subcellular Localization
CV Term
Microarray Data
	Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002) AI404749
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034435 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • FBgn0034435 GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies • FBgn0034435
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG9975 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9975 Class Mutagen Stocks Known lesion CG9975GD14331 in vitro construct | RNAi in vitro construct | regulatory fusion 2 Yes CG9975GD15070 in vitro construct | RNAi in vitro construct | regulatory fusion 0 Yes
Aneuploid Aberrations
Useful duplication	Dp(2;Y)53D;57C
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD14331} NA P{GD15070} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}BG02222 NA
Related Comments
	Please look at the allele reports for the complete phenotype data
Gene Ontology: Function, Process & Cellular Component ( 0 )
Molecular Function
CV term Evidence References
Biological Process
CV term Evidence References
Cellular Component
CV term Evidence References
Sequence Ontology: Class of Gene
	protein_coding_gene   nuclear_gene
Interactions & Pathways
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9975 allele Gene References
External Data
Linkouts	BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions • 62884
Orthologs
Genome-wide drosophilid orthologs	Dana\GF12329 Dere\GG21961 Dgri\GH20678 Dmoj\GI19042 Dper\GL11615 Dpse\GA22160 Dsec\GM21949 Dsim\GD11446 Dvir\GJ20010 Dwil\GK20841 Dyak\GE12040
Curated drosophilid orthologs	Dpse\GA22160   Dsim\CG9975 (Harmon et al., 2003)
Linkouts	InParanoid orthologs - Eukaryotic orthologs • ENSANGP00000020741 Anopheles gambiae (Ensembl) WBGene00037742 Caenorhabditis briggsae (Wormbase) WBGene00008079 Caenorhabditis elegans (Wormbase)
Functional Complementation between Species
Inter-Species Misexpression Data
Produces phenotype in
Produces NO phenotype in
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	12774 w1118; P{GT1}BG02222
VDRC	v36189 w1118; P{GD14331}v36189 v36190 w1118; P{GD14331}v36190/TM3
Genomic Clones ( 2 )
	BACR21D20 BACR19I21
cDNA Clones ( 66 )
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT17665
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT21041 AT26462 AT20760 AT04202 AT14504 AT23757 AT04001 AT13148 AT12505 GH26259 LP11692 AT11373 AT04239 AT14722 AT17462 AT11936 AT04240 AT23381 AT23724 AT07450 AT16576 AT12841 AT15827 AT04003 GH24571 AT29408 AT08016 AT05141 AT28173 AT03811 GH20739 AT26279 AT11824 AT15258 AT06825 AT23745 AT05109 AT10533 AT07457 AT31379 AT07950 AT28665 AT11894
Other clones	bs61g10 bs80d02 bs54c02 bs81e04 bs24g02 bs13d07 bs36b08 bs06c03 bs69b12 bs04b02 bs09a04 bs25b10 bs01a05 bs30h12 bs09g03 bs52b01 bs20d05 bs53h02 bs40f11 bs83a03 bs48b08 bs59d03
RNAi & Array Information
Affy Oligo
Linkouts	DRSC - RNAi screening (Harvard): high-throughput cell culture data and design • FBgn0034435 GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data • FBgn0034435
Antibody Information
Other Information
Discoverer
Etymology
Identification
Position Effect Variegation Data
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Comments About Role
Comments About Molecular Function
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137568 RefSeq (Proteins) • NP_611412 DDBJ / EMBL / GenBank • AE003796 AAF57576 AI297401 AI389532 AI404749 AI406073 AI944404 AI944855 AI945102 AI945167 AI945483 AI946062 AI946384 AI946401 AI946726 AI946814 AI947193 BE662010 BF502049 BT001328 AAN71083 UniProtKB/TrEMBL • Q8IHB1 A1ZBJ8
Other Crossreferences
Linkouts
	BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions • 62884 DEDB - Drosophila exon database: splicing graphs • 11861 DRSC - RNAi screening (Harvard): high-throughput cell culture data and design • FBgn0034435 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034435 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • FBgn0034435 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0034435 GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies • FBgn0034435