Aberration Dmel\Df(3R)XTA1

General Information
Symbol	Dmel\Df(3R)XTA1	Species	D. melanogaster
Name		FlyBase ID	FBab0002702
Feature type	chromosomal_deletion	Created / Updated	2006-08-22/2006-08-22

Formalized genetic data	slo << bk1 << Su(var)96B96D << bk2 << l(3)rJ880
Sequence coordinates
Deleted segment	96A17--96D1
Duplicated segment
Computed Breakpoints include	96A17-96A21;96D1
Breakpoints Inherited
Nature of the Aberration
Cytological Order
Progenitor
Mutagen
Class of aberration (relative to progenitor)	chromosomal_deletion (Ferguson and Anderson, 1992, Cobb, 1996, Wustmann et al., 1989)
Breakpoints	95B;96D (Wustmann et al., 1989) 94C1-94C5;96B6-96B7 (Ferguson and Anderson, 1992) 96B;96D (Cobb, 1996)
Causes alleles
Carries alleles
Transposon Insertions
Genetic mapping information
Comments
Comments on Cytology
	Left limit of break 1 from non-inclusion of slo (FBrf0091033) Right limit of break 1 from inclusion of tld (FBrf0045941) Left limit of break 2 from polytene analysis (FBrf0050576) Right limit of break 2 from non-inclusion of l(3)rJ880 (FBrf0067338)
Molecularly Mapped Breakpoints

Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	tld (Tearle and Nusslein-Volhard, 1987, Ferguson and Anderson, 1992, Jacobs et al., 1998, Riede, 2001) asp (Cobb, 1996) bai (Luschnig et al., 2004, Bartoszewski et al., 2004) ssh (BDGP Project Members, 1994-1999, Spradling et al., 1999) Su(var)96B96D (Wustmann et al., 1989)
Molecular Data
Completely deleted	CycB3 (Jacobs et al., 1998)
Genes NOT Deleted / Disrupted
Complementation Data
	CycB3 (BDGP Project Members, 1994-1999, Spradling et al., 1999) OstStt3 (BDGP Project Members, 1994-1999, Spradling et al., 1999) Aats-gln (BDGP Project Members, 1994-1999, Spradling et al., 1999) bam (BDGP Project Members, 1994-1999, Spradling et al., 1999) Fur1 (BDGP Project Members, 1994-1999, Spradling et al., 1999) slo (Cobb, 1996) cpo (BDGP Project Members, 1994-1999) scrib (Brumby et al., 2004) l(3)rI809 (BDGP Project Members, 1994-1999, Spradling et al., 1999) l(3)rJ880 (BDGP Project Members, 1994-1999, Spradling et al., 1999) l(3)rQ197 (BDGP Project Members, 1994-1999, Spradling et al., 1999) l(3)01969 (BDGP Project Members, 1994-1999, Spradling et al., 1999) l(3)05471 (BDGP Project Members, 1994-1999) aor (Cobb, 1996) Indf (Cobb, 1996) crb (Cobb, 1996)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations	Midgut development of mutant embryos is wild type. (Bilder and Scott, 1995) Mutant phenotype can be suppressed by doubling the dose of dpp. (Ferguson and Anderson, 1992) No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1. (Halsell and Kiehart, 1998) Wild type nonanol phenotype; repulsion. (Cobb, 1996)
Position Effect Variegation Data

Stocks ( 3 )
Kyoto	101626 Df(3R)XTA1, th¹ st¹ kni^ri-1 roe¹ p^p / Dp(3;3)M95A⁺13, st¹ e¹ 107287 Df(3R)XTA1, th¹ st¹ kni^ri-1 rn^roe-1 p¹/Dp(3;3)M95A⁺13, st¹ e¹
Bloomington	2366 Df(3R)XTA1, th¹ st¹ kni^ri-1 rn^roe-1 p¹/Dp(3;3)M95A⁺13, st¹ e¹
Notes on Origin
Discoverer	Jurgens.

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	Df(3R)XTA1 Df(3R)XTAI (Brumby et al., 2004, Carrera et al., 1998)
Name Synonym
Secondary FlyBase IDs

References ( 20 )
Research paper	Bartoszewski et al., 2004, Mech. Dev. 121(10): 1259--1273 Drosophila p24 homologues eclair and baiser are necessary for the activity of the maternally expressed Tkv receptor during early embryogenesis. [FBrf0179736] Brumby et al., 2004, Genetics 168(1): 227--251 A genetic screen for dominant modifiers of a cyclin E hypomorphic mutation identifies novel regulators of S-phase entry in Drosophila. [FBrf0180291] Riede, 2001, D. I. S. 84: 103--114 Gene combinations inducing neoplasms in Drosophila. [FBrf0150723] Yedvobnick et al., 2001, genesis 30(4): 250--258 Identification of chromosomal deficiencies that modify Drosophila mastermind mutant phenotypes. [FBrf0138541] Gildea et al., 2000, Genetics 156(2): 645--663 A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2. [FBrf0129826] Greaves et al., 1999, Genetics 153(4): 1753--1766 A screen for identifying genes interacting with armadillo, the Drosophila homolog of beta-catenin. [FBrf0123026] Spradling et al., 1999, Genetics 153(1): 135--177 The Berkeley Drosophila genome project gene disruption project. Single P-element insertions mutating 25% of vital Drosophila genes. [FBrf0111489] Carrera et al., 1998, Proc. Natl. Acad. Sci. USA 95(18): 10779--10784 A modifier screen in the eye reveals control genes for Kruppel activity in the Drosophila embryo. [FBrf0104417] Halsell and Kiehart, 1998, Genetics 148(4): 1845--1863 Second-site noncomplementation identifies genomic regions required for Drosophila nonmuscle myosin function during morphogenesis. [FBrf0102325] Jacobs et al., 1998, Genes Dev. 12(23): 3741--3751 Drosophila Cyclin B3 is required for female fertility and is dispensable for mitosis like Cyclin B. [FBrf0105853] Secombe et al., 1998, Genetics 149(4): 1867--1882 Analysis of a Drosophila cyclin E hypomorphic mutation suggests a novel role for cyclin E in cell proliferation control during eye imaginal disc development. [FBrf0103367] Cobb, 1996, Genetics 144(4): 1577--1587 Genotypic and phenotypic characterization of the Drosophila melanogaster olfactory mutation Indifferent. [FBrf0091033] Bilder and Scott, 1995, Genetics 141(3): 1087--1100 Genomic regions required for morphogenesis of the Drosophila embryonic midgut. [FBrf0083777] Ferguson and Anderson, 1992, Development 114: 583--597 Localized enhancement and repression of the activity of the TGF- family member, decapentaplegic, is necessary for dorsal-ventral pattern formation in the Drosophila embryo. [FBrf0055881] Wustmann et al., 1989, Molec. gen. Genet. 217: 520--527 The genetics of position-effect variegation modifying loci in Drosophila melanogaster. [FBrf0050576]
Supplementary material	Luschnig et al., 2004, Genetics 167(1): Supplemental Table One. [FBrf0179048]
FlyBase analysis	FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type. En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]
Stock list	Tearle and Nusslein-Volhard, 1987, D. I. S. 66: 209--269 Tubingen mutants and stock list. [FBrf0045941]
Computer file	BDGP Project Members, 1994-1999, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0067338]
Book	Lindsley and Zimm, 1992, The Genome of Drosophila melanogaster. The Genome of Drosophila melanogaster. [FBrf0066905]