Home
A Database of
Drosophila
Genes & Genomes
FB2008_05, released May 30, 2008
Home
Tools
BLAST
GBrowse
QueryBuilder
TermLink
ImageBrowse
Interactions Browser
Apollo
CytoSearch
QuickSearch
Batch Download
Coordinate Converter
Google™ FlyBase
Find A Person
Update An Address
Add A New Person
Files
Downloads:
Precomputed files
Archived data
Releases FTP
Genomes FTP
Lists:
Transposons (Dmel)
Transposons (other)
Vectors & Constructs
Anatomical Terms
Map Conversion
Species
Phylogeny
Synteny Table
Drosophilidae
Abbreviations
Documents
About FlyBase
Reference Manual:
Sections
Contents
Nomenclature
Release Notes
Resources
All resources
Interactive Fly
Textpresso for Fly
AAA site
BDGP
DHGP
DGRC
Model Organisms
Stock Collections:
Bloomington
DrosDel
Ehime
Exelixis (Harvard)
GDP (Baylor)
Kyoto
NIG-Fly
Szeged
Tucson
VDRC
News
News
FlyBase Positions
Meetings
Courses
Fly Board
White papers
Funding
bionet.dros
Help
Google™ FlyBase
Site Map
FAQs
Report help
New to Flies
Pers. comm.
Author guidelines
Known Problems
Contact FlyBase
Archives
Prior Home Page
R4.3 BLAST
R4.3 GBrowse
Older Archives
OrthoView:
D. pseudoobscura
(Release 2.2; Apr 2008)
Instructions
Instructions
[Help]
Search using a sequence name or range, gene symbol (but not full name, for example, ct but not cut), gene identifier, insertion symbol, insertion identifier, or other landmark. Searches are case-sensitive. Wildcards are not supported at this time. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position.
Examples
:
cnn
,
FBgn0000490
,
2:100000..130000
,
3:200000..220000
,
4_group3:200000..220000
,
XL_group1a:200000..220000
,
XL_group1e:200000..220000
,
XR_group6:200000..220000
,
XR_group8:200000..220000
.
Search
Search
Landmark or Region
:
Report & Analysis tools
:
Download Decorated FASTA File
Download GFF File
Download HTML table view
Data Source
A. gambiae (mosquito)
C. elegans (worm)
D. ananassae
D. erecta
D. grimshawi
D. melanogaster (R5.9)
D. mojavensis
D. persimilis
D. pseudoobscura (R2.2)
D. sechellia
D. simulans
D. virilis
D. willistoni
D. yakuba
Insertions in Stock Collections
T. castaneum (red flour beetle)
Scroll/Zoom:
Show 200 kbp
Show 100 kbp
Show 100 kbp
Show 40 kbp
Show 20 kbp
Show 10 kbp
Show 5 kbp
Show 2 kbp
Show 1 kbp
Show 200 bp
Show 100 bp
Flip
Overview
Overview
Details
Details
Orthologous region in
D. melanogaster
Clear highlighting
Tracks
Tracks
01. Gene Model features
01. Gene Model features
Gene Span
mRNA
CDS
02. Genomic features
02. Genomic features
tRNA
Other non-coding RNA
Transgene insertion site
miRNA
Natural transposon
03. GLEAN Consensus/Homology Predictions
03. GLEAN Consensus/Homology Predictions
GLEANR
04. FlyBase predictions
04. FlyBase predictions
GenScan/FB
TwinScan/FB
GeneWise/FB
05. Batzoglou predictions
05. Batzoglou predictions
Contrast
06. Brent group predictions
06. Brent group predictions
N_Scan
07. D.Gilbert predictions
07. D.Gilbert predictions
SNAP+prot.homology
SNAP
08. Eisen group predictions
08. Eisen group predictions
GeneMapper
GeneWise
Exonerate
09. NCBI predictions
09. NCBI predictions
Gnomon
10. Oxford (Ponting group) predictions
10. Oxford (Ponting group) predictions
Oxford pipeline
11. Pachter group predictions
11. Pachter group predictions
GeneMapper + putative ortholog link/PACH
12. R.Guigo group predictions
12. R.Guigo group predictions
GeneId
GeneId-U12
13. Similarity: Synteny features
13. Similarity: Synteny features
Syntenic region
Orthologs
General
General
3-frame translation (forward)
DNA/GC Content
3-frame translation (reverse)
Display Settings
Display Settings
Image Width
640
800
1024
Key position
Between
Beneath
Left
Right
Track Name Table
Alphabetic
Varying
Highlight feature(s) (feature1 feature2...)
Highlight regions (region1:start..end region2:start..end)
-override
Add your own tracks
Add your own tracks
Upload your own annotations:
[Help]
Upload a file
Add remote annotations:
[Help]
Enter Remote Annotation URL